Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HTTP42858 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HTTP42858 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.75■□□□□ 0.27
HTTP42858 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC16.75■□□□□ 0.27
HTTP42858 RN7SL470P-201ENST00000583069 259 ntBASIC16.75■□□□□ 0.27
HTTP42858 AC004686.1-201ENST00000605113 538 ntBASIC16.75■□□□□ 0.27
HTTP42858 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HTTP42858 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.75■□□□□ 0.27
HTTP42858 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.75■□□□□ 0.27
HTTP42858 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HTTP42858 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HTTP42858 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 AC069224.1-201ENST00000566372 1715 ntBASIC16.75■□□□□ 0.27
HTTP42858 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 BAK1P1-201ENST00000317045 636 ntBASIC16.75■□□□□ 0.27
HTTP42858 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 AC106047.2-201ENST00000511723 743 ntBASIC16.75■□□□□ 0.27
HTTP42858 MBP-238ENST00000580402 915 ntTSL 5 BASIC16.75■□□□□ 0.27
HTTP42858 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.75■□□□□ 0.27
HTTP42858 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC16.75■□□□□ 0.27
HTTP42858 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 LINC02447-202ENST00000501888 2146 ntBASIC16.75■□□□□ 0.27
HTTP42858 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.75■□□□□ 0.27
HTTP42858 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC16.75■□□□□ 0.27
HTTP42858 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HTTP42858 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HTTP42858 RNA5SP359-201ENST00000364838 113 ntBASIC16.74■□□□□ 0.27
HTTP42858 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC16.74■□□□□ 0.27
HTTP42858 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 MIR6720-201ENST00000611664 98 ntBASIC16.74■□□□□ 0.27
HTTP42858 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC16.74■□□□□ 0.27
HTTP42858 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.74■□□□□ 0.27
HTTP42858 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HTTP42858 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 AC068867.1-201ENST00000559855 150 ntBASIC16.74■□□□□ 0.27
HTTP42858 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.74■□□□□ 0.27
HTTP42858 AC087392.5-201ENST00000612517 489 ntBASIC16.74■□□□□ 0.27
HTTP42858 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.74■□□□□ 0.27
HTTP42858 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.74■□□□□ 0.27
HTTP42858 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC16.74■□□□□ 0.27
HTTP42858 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.74■□□□□ 0.27
HTTP42858 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.74■□□□□ 0.27
HTTP42858 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC16.74■□□□□ 0.27
HTTP42858 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HTTP42858 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.74■□□□□ 0.27
HTTP42858 AC004554.1-201ENST00000422830 1468 ntBASIC16.73■□□□□ 0.27
HTTP42858 AL109809.1-201ENST00000418979 1367 ntBASIC16.73■□□□□ 0.27
HTTP42858 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HTTP42858 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HTTP42858 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 Z69890.1-201ENST00000382990 339 ntBASIC16.73■□□□□ 0.27
HTTP42858 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
HTTP42858 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC16.73■□□□□ 0.27
HTTP42858 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HTTP42858 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC16.73■□□□□ 0.27
HTTP42858 AC140113.1-201ENST00000603467 169 ntBASIC16.73■□□□□ 0.27
HTTP42858 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.73■□□□□ 0.27
HTTP42858 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.73■□□□□ 0.27
HTTP42858 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.73■□□□□ 0.27
HTTP42858 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HTTP42858 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HTTP42858 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.73■□□□□ 0.27
HTTP42858 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC16.73■□□□□ 0.27
HTTP42858 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 TREHP1-201ENST00000531328 465 ntBASIC16.73■□□□□ 0.27
HTTP42858 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.73■□□□□ 0.27
HTTP42858 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms