Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.63■□□□□ 0.41
SCN4AP35499 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.63■□□□□ 0.41
SCN4AP35499 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.63■□□□□ 0.41
SCN4AP35499 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 SURF4-203ENST00000371991 715 ntTSL 3 BASIC17.63■□□□□ 0.41
SCN4AP35499 AL357373.1-201ENST00000394974 322 ntBASIC17.63■□□□□ 0.41
SCN4AP35499 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC17.63■□□□□ 0.41
SCN4AP35499 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC17.63■□□□□ 0.41
SCN4AP35499 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC17.63■□□□□ 0.41
SCN4AP35499 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC17.63■□□□□ 0.41
SCN4AP35499 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.63■□□□□ 0.41
SCN4AP35499 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC17.63■□□□□ 0.41
SCN4AP35499 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.63■□□□□ 0.41
SCN4AP35499 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SCN4AP35499 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.63■□□□□ 0.41
SCN4AP35499 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SCN4AP35499 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.62■□□□□ 0.41
SCN4AP35499 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.62■□□□□ 0.41
SCN4AP35499 PCDHA12-202ENST00000613593 2588 ntBASIC17.62■□□□□ 0.41
SCN4AP35499 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.62■□□□□ 0.41
SCN4AP35499 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC17.62■□□□□ 0.41
SCN4AP35499 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC17.62■□□□□ 0.41
SCN4AP35499 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.62■□□□□ 0.41
SCN4AP35499 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC17.62■□□□□ 0.41
SCN4AP35499 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC17.62■□□□□ 0.41
SCN4AP35499 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC17.62■□□□□ 0.41
SCN4AP35499 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC17.62■□□□□ 0.41
SCN4AP35499 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
SCN4AP35499 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC17.62■□□□□ 0.41
SCN4AP35499 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SCN4AP35499 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
SCN4AP35499 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
SCN4AP35499 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SCN4AP35499 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.61■□□□□ 0.41
SCN4AP35499 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.61■□□□□ 0.41
SCN4AP35499 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.61■□□□□ 0.41
SCN4AP35499 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SCN4AP35499 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC17.61■□□□□ 0.41
SCN4AP35499 ERP29P1-201ENST00000442902 706 ntBASIC17.61■□□□□ 0.41
SCN4AP35499 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC17.61■□□□□ 0.41
SCN4AP35499 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC17.61■□□□□ 0.41
SCN4AP35499 AC106047.2-201ENST00000511723 743 ntBASIC17.61■□□□□ 0.41
SCN4AP35499 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SCN4AP35499 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC17.61■□□□□ 0.41
SCN4AP35499 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
SCN4AP35499 AC140113.1-201ENST00000603467 169 ntBASIC17.61■□□□□ 0.41
SCN4AP35499 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC17.61■□□□□ 0.41
SCN4AP35499 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.61■□□□□ 0.41
SCN4AP35499 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC17.61■□□□□ 0.41
SCN4AP35499 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SCN4AP35499 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SCN4AP35499 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC17.61■□□□□ 0.41
SCN4AP35499 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC17.61■□□□□ 0.41
SCN4AP35499 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC17.61■□□□□ 0.41
SCN4AP35499 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC17.61■□□□□ 0.41
SCN4AP35499 GCOM2-201ENST00000509133 1104 ntBASIC17.61■□□□□ 0.41
SCN4AP35499 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC17.61■□□□□ 0.41
SCN4AP35499 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 AP005264.6-204ENST00000588436 719 ntBASIC17.61■□□□□ 0.41
SCN4AP35499 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 PTPN20CP-201ENST00000614090 920 ntBASIC17.61■□□□□ 0.41
SCN4AP35499 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SCN4AP35499 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SCN4AP35499 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC17.6■□□□□ 0.41
SCN4AP35499 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.6■□□□□ 0.41
SCN4AP35499 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms