Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CDH3P22223 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH3P22223 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH3P22223 AL158212.4-201ENST00000624062 1286 ntBASIC15.17■□□□□ 0.02
CDH3P22223 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH3P22223 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
CDH3P22223 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CDH3P22223 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH3P22223 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH3P22223 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
CDH3P22223 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH3P22223 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH3P22223 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CDH3P22223 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CDH3P22223 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH3P22223 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH3P22223 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CDH3P22223 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CDH3P22223 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CDH3P22223 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.16■□□□□ 0.02
CDH3P22223 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 KRT17P7-201ENST00000451704 1104 ntBASIC15.16■□□□□ 0.02
CDH3P22223 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH3P22223 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.16■□□□□ 0.02
CDH3P22223 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH3P22223 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH3P22223 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH3P22223 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CDH3P22223 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH3P22223 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CDH3P22223 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 CU639417.3-201ENST00000624240 1404 ntBASIC15.16■□□□□ 0.02
CDH3P22223 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH3P22223 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CDH3P22223 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 AC079781.5-202ENST00000641784 3743 ntBASIC15.15■□□□□ 0.02
CDH3P22223 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CDH3P22223 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
CDH3P22223 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.15■□□□□ 0.02
CDH3P22223 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 TOMM22P5-201ENST00000416399 439 ntBASIC15.15■□□□□ 0.02
CDH3P22223 NME2P1-201ENST00000426182 414 ntBASIC15.15■□□□□ 0.02
CDH3P22223 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 GAPDHP21-201ENST00000450301 1010 ntBASIC15.15■□□□□ 0.02
CDH3P22223 RN7SL752P-201ENST00000463779 287 ntBASIC15.15■□□□□ 0.02
CDH3P22223 RN7SL399P-201ENST00000471648 279 ntBASIC15.15■□□□□ 0.02
CDH3P22223 AC011495.1-201ENST00000498085 584 ntBASIC15.15■□□□□ 0.02
CDH3P22223 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.15■□□□□ 0.02
CDH3P22223 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.15■□□□□ 0.02
CDH3P22223 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.15■□□□□ 0.02
CDH3P22223 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.15■□□□□ 0.02
CDH3P22223 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
CDH3P22223 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH3P22223 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH3P22223 AC007292.2-201ENST00000593524 1812 ntBASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms