Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 AC008894.3-201ENST00000624324 3103 ntBASIC18.35■□□□□ 0.53
COL4A1P02462 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A1P02462 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A1P02462 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A1P02462 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC18.35■□□□□ 0.53
COL4A1P02462 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
COL4A1P02462 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A1P02462 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC18.35■□□□□ 0.53
COL4A1P02462 AC007292.2-201ENST00000593524 1812 ntBASIC18.35■□□□□ 0.53
COL4A1P02462 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A1P02462 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A1P02462 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL4A1P02462 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A1P02462 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A1P02462 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 RN7SKP214-201ENST00000364208 315 ntBASIC18.34■□□□□ 0.53
COL4A1P02462 LBH-202ENST00000401506 485 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A1P02462 AL133466.1-201ENST00000447582 150 ntBASIC18.34■□□□□ 0.53
COL4A1P02462 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A1P02462 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A1P02462 ALG3P1-201ENST00000508806 1114 ntBASIC18.34■□□□□ 0.53
COL4A1P02462 RTN3P1-201ENST00000536295 711 ntBASIC18.34■□□□□ 0.53
COL4A1P02462 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A1P02462 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 AL157791.1-201ENST00000553667 1699 ntBASIC18.34■□□□□ 0.53
COL4A1P02462 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
COL4A1P02462 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
COL4A1P02462 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL4A1P02462 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL4A1P02462 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A1P02462 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
COL4A1P02462 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A1P02462 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 FGFR3P1-201ENST00000449999 601 ntBASIC18.34■□□□□ 0.53
COL4A1P02462 NDUFS6P1-201ENST00000485187 316 ntBASIC18.34■□□□□ 0.53
COL4A1P02462 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A1P02462 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A1P02462 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL4A1P02462 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A1P02462 MIR6720-201ENST00000611664 98 ntBASIC18.34■□□□□ 0.53
COL4A1P02462 AP003419.4-201ENST00000616071 517 ntBASIC18.34■□□□□ 0.53
COL4A1P02462 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A1P02462 AC126365.1-201ENST00000578585 1514 ntBASIC18.33■□□□□ 0.53
COL4A1P02462 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.53
COL4A1P02462 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A1P02462 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A1P02462 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A1P02462 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.33■□□□□ 0.53
COL4A1P02462 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A1P02462 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC18.33■□□□□ 0.53
COL4A1P02462 AL590440.2-201ENST00000641973 1595 ntBASIC18.33■□□□□ 0.53
COL4A1P02462 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A1P02462 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18.33■□□□□ 0.53
COL4A1P02462 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
COL4A1P02462 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.33■□□□□ 0.53
COL4A1P02462 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.33■□□□□ 0.53
COL4A1P02462 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
COL4A1P02462 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
COL4A1P02462 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A1P02462 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
COL4A1P02462 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC18.33■□□□□ 0.52
COL4A1P02462 PARP8-206ENST00000503665 572 ntTSL 4 BASIC18.33■□□□□ 0.52
COL4A1P02462 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.33■□□□□ 0.52
COL4A1P02462 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.33■□□□□ 0.52
COL4A1P02462 AL353770.1-201ENST00000614915 403 ntBASIC18.33■□□□□ 0.52
COL4A1P02462 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A1P02462 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A1P02462 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A1P02462 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms