Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TNFP01375 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TNFP01375 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TNFP01375 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TNFP01375 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TNFP01375 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TNFP01375 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TNFP01375 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.94□□□□□ -0.02
TNFP01375 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TNFP01375 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.94□□□□□ -0.02
TNFP01375 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
TNFP01375 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TNFP01375 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 MIR326-201ENST00000362220 95 ntBASIC14.94□□□□□ -0.02
TNFP01375 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.94□□□□□ -0.02
TNFP01375 HOMER2P2-201ENST00000451621 847 ntBASIC14.94□□□□□ -0.02
TNFP01375 AC022494.1-201ENST00000466044 728 ntBASIC14.94□□□□□ -0.02
TNFP01375 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.94□□□□□ -0.02
TNFP01375 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TNFP01375 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.94□□□□□ -0.02
TNFP01375 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TNFP01375 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TNFP01375 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.93□□□□□ -0.02
TNFP01375 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.93□□□□□ -0.02
TNFP01375 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.93□□□□□ -0.02
TNFP01375 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TNFP01375 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 BTBD6P1-201ENST00000412176 1267 ntBASIC14.93□□□□□ -0.02
TNFP01375 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 Z93015.1-201ENST00000451718 390 ntBASIC14.93□□□□□ -0.02
TNFP01375 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 AC108725.1-201ENST00000495472 409 ntBASIC14.93□□□□□ -0.02
TNFP01375 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
TNFP01375 MIR4741-201ENST00000579822 90 ntBASIC14.93□□□□□ -0.02
TNFP01375 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.93□□□□□ -0.02
TNFP01375 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.93□□□□□ -0.02
TNFP01375 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 AC087481.3-201ENST00000602886 1894 ntBASIC14.93□□□□□ -0.02
TNFP01375 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TNFP01375 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 432.1 ms