Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.54■□□□□ 0.08
TRIM38O00635 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.54■□□□□ 0.08
TRIM38O00635 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM38O00635 AL158212.4-201ENST00000624062 1286 ntBASIC15.54■□□□□ 0.08
TRIM38O00635 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
TRIM38O00635 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM38O00635 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 LINC01101-201ENST00000622953 1884 ntBASIC15.54■□□□□ 0.08
TRIM38O00635 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TRIM38O00635 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM38O00635 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM38O00635 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 AC106881.1-201ENST00000605849 3329 ntBASIC15.53■□□□□ 0.08
TRIM38O00635 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM38O00635 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TRIM38O00635 USP32P1-208ENST00000506594 1164 ntBASIC15.53■□□□□ 0.08
TRIM38O00635 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM38O00635 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM38O00635 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TRIM38O00635 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM38O00635 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRIM38O00635 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM38O00635 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM38O00635 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM38O00635 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM38O00635 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
TRIM38O00635 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM38O00635 KRT8P37-201ENST00000451609 1420 ntBASIC15.52■□□□□ 0.08
TRIM38O00635 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
TRIM38O00635 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM38O00635 AC023908.3-201ENST00000564211 3047 ntBASIC15.52■□□□□ 0.08
TRIM38O00635 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM38O00635 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM38O00635 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM38O00635 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM38O00635 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM38O00635 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM38O00635 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM38O00635 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
TRIM38O00635 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM38O00635 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM38O00635 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM38O00635 AC074338.1-201ENST00000416825 156 ntBASIC15.52■□□□□ 0.08
TRIM38O00635 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM38O00635 EEF1DP4-201ENST00000446006 880 ntBASIC15.52■□□□□ 0.08
TRIM38O00635 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.52■□□□□ 0.08
TRIM38O00635 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.52■□□□□ 0.08
TRIM38O00635 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM38O00635 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM38O00635 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM38O00635 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.52■□□□□ 0.08
TRIM38O00635 AC036164.1-201ENST00000570544 333 ntBASIC15.52■□□□□ 0.08
TRIM38O00635 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM38O00635 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.52■□□□□ 0.08
TRIM38O00635 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.52■□□□□ 0.08
TRIM38O00635 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM38O00635 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM38O00635 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
TRIM38O00635 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms