Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 ACE3P-201ENST00000423435 1973 ntBASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 AP000845.1-201ENST00000581677 2131 ntBASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 REXO1L2P-201ENST00000425429 2069 ntBASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 AC027369.6-201ENST00000525520 931 ntBASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HIF3AQ9Y2N7 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 AC092580.3-201ENST00000430932 139 ntBASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 AC000095.1-201ENST00000603208 874 ntBASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 AL844908.2-201ENST00000609461 460 ntBASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 AL691403.2-201ENST00000618460 490 ntBASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms