Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 MVK-214ENST00000629016 1591 ntTSL 5 BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 GSN-206ENST00000394353 2311 ntTSL 2 BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 PPT1-215ENST00000641471 2368 ntBASIC19.28■□□□□ 0.68
SCN11AQ9UI33 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 OR2R1P-201ENST00000441404 914 ntBASIC19.28■□□□□ 0.68
SCN11AQ9UI33 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 MIR4722-201ENST00000578292 60 ntBASIC19.28■□□□□ 0.68
SCN11AQ9UI33 MIR4754-201ENST00000582477 89 ntBASIC19.28■□□□□ 0.68
SCN11AQ9UI33 RN7SL163P-201ENST00000583100 276 ntBASIC19.28■□□□□ 0.68
SCN11AQ9UI33 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 AC013726.1-201ENST00000563747 2285 ntBASIC19.28■□□□□ 0.68
SCN11AQ9UI33 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 RBM8B-201ENST00000555532 525 ntBASIC19.27■□□□□ 0.68
SCN11AQ9UI33 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN11AQ9UI33 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 PRKXP1-201ENST00000561423 1122 ntBASIC19.27■□□□□ 0.67
SCN11AQ9UI33 PAM16-211ENST00000575848 518 ntTSL 3 BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SCN11AQ9UI33 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 AC007292.2-201ENST00000593524 1812 ntBASIC19.26■□□□□ 0.67
SCN11AQ9UI33 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 CMC1-204ENST00000423894 549 ntTSL 2 BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 PTPA-215ENST00000432124 567 ntTSL 4 BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 DDX5-235ENST00000630471 473 ntTSL 4 BASIC19.26■□□□□ 0.67
SCN11AQ9UI33 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC19.25■□□□□ 0.67
SCN11AQ9UI33 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SCN11AQ9UI33 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN11AQ9UI33 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN11AQ9UI33 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SCN11AQ9UI33 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms