Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AC127383.1-201ENST00000444697 1800 ntBASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 FGD5P1-202ENST00000614866 2498 ntBASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AL671277.1-201ENST00000429656 993 ntBASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AC099522.2-201ENST00000607001 744 ntBASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 AKAP8P1-201ENST00000434743 1349 ntBASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CHMP1AQ9HD42 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CHMP1AQ9HD42 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms