Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 AL627095.1-201ENST00000414775 321 ntBASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 AL080243.1-201ENST00000423293 1060 ntBASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 ANKRD26P1-203ENST00000569528 966 ntBASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL25A1Q9BXS0 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 GOLGA6L16P-201ENST00000441780 1299 ntBASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 SNRPD2P2-201ENST00000473818 333 ntBASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 AC147876.1-201ENST00000504408 322 ntBASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 F11R-204ENST00000537746 1245 ntTSL 2 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 AP001462.1-201ENST00000594089 452 ntBASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 RPL4P6-201ENST00000438116 1304 ntBASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 FKBP4P8-201ENST00000610931 1369 ntBASIC15.11■□□□□ 0.01
COL25A1Q9BXS0 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 GGT3P-204ENST00000453783 1664 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 AC026471.1-201ENST00000564629 3026 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 MIR1226-201ENST00000408658 75 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 XBP1P1-201ENST00000436573 652 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 AC093106.1-201ENST00000437271 352 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 ASS1P2-201ENST00000439895 1223 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 CCNL2P1-201ENST00000512846 969 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 KRT127P-201ENST00000547183 433 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 MT2A-202ENST00000561491 581 ntTSL 2 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 NAT9-204ENST00000578822 839 ntTSL 3 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 GGNBP1-204ENST00000613113 887 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 AL591424.3-201ENST00000614278 872 ntBASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL25A1Q9BXS0 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms