Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 AL139400.1-201ENST00000366220 510 ntBASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 RPL37AP1-201ENST00000412502 279 ntBASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 CNN2P11-201ENST00000429351 262 ntBASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 METTL21AP1-201ENST00000438852 635 ntBASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 AP001059.3-201ENST00000619053 235 ntBASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 FO393414.2-201ENST00000405153 598 ntBASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM56Q9BRZ2 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.11
TRIM56Q9BRZ2 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms