Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 KRT8P6-201ENST00000399259 1207 ntBASIC15.19■□□□□ 0.02
TTC28Q96AY4 GGTLC4P-201ENST00000402176 664 ntBASIC15.19■□□□□ 0.02
TTC28Q96AY4 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 MIR2278-201ENST00000516344 96 ntBASIC15.19■□□□□ 0.02
TTC28Q96AY4 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 AC010976.2-201ENST00000609697 852 ntBASIC15.19■□□□□ 0.02
TTC28Q96AY4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC15.18■□□□□ 0.02
TTC28Q96AY4 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 KRT18P46-201ENST00000435568 1279 ntBASIC15.18■□□□□ 0.02
TTC28Q96AY4 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 AP000322.3-201ENST00000608665 388 ntBASIC15.18■□□□□ 0.02
TTC28Q96AY4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 REXO1L5P-201ENST00000622260 2098 ntBASIC15.18■□□□□ 0.02
TTC28Q96AY4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 HYMAI-201ENST00000635591 3347 ntBASIC15.18■□□□□ 0.02
TTC28Q96AY4 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 GNG10P1-201ENST00000452289 199 ntBASIC15.18■□□□□ 0.02
TTC28Q96AY4 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 MIR4254-201ENST00000581063 76 ntBASIC15.18■□□□□ 0.02
TTC28Q96AY4 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.18■□□□□ 0.02
TTC28Q96AY4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TTC28Q96AY4 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 AC134043.2-201ENST00000624206 2238 ntBASIC15.17■□□□□ 0.02
TTC28Q96AY4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 AC138701.2-201ENST00000553634 226 ntBASIC15.17■□□□□ 0.02
TTC28Q96AY4 NEK4P3-201ENST00000604859 544 ntBASIC15.17■□□□□ 0.02
TTC28Q96AY4 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 AC004066.1-201ENST00000502488 802 ntBASIC15.17■□□□□ 0.02
TTC28Q96AY4 GPX3-202ENST00000517973 612 ntTSL 3 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC15.17■□□□□ 0.02
TTC28Q96AY4 HNRNPA1P16-201ENST00000575692 955 ntBASIC15.17■□□□□ 0.02
TTC28Q96AY4 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TTC28Q96AY4 API5-208ENST00000531273 1868 ntTSL 2 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms