Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 AC026691.1-201ENST00000602502 2017 ntBASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.43■□□□□ 0.06
HDDC3Q8N4P3 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 AC007787.1-201ENST00000588095 1583 ntBASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 ZNF767P-206ENST00000513792 565 ntBASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 RNA5SP423-201ENST00000517127 109 ntBASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 LRRC59-203ENST00000576448 1531 ntBASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HDDC3Q8N4P3 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 AC148477.4-201ENST00000613430 1793 ntBASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 AC006001.1-201ENST00000325130 474 ntBASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 BTBD6P1-201ENST00000412176 1267 ntBASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 RNA5SP486-201ENST00000515961 83 ntBASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HDDC3Q8N4P3 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms