Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
CCDC60Q8IWA6 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
CCDC60Q8IWA6 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
CCDC60Q8IWA6 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC60Q8IWA6 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC60Q8IWA6 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC60Q8IWA6 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.02■□□□□ 0.31
CCDC60Q8IWA6 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.02■□□□□ 0.31
CCDC60Q8IWA6 TMBIM7P-203ENST00000641617 1718 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 AC011270.2-201ENST00000624293 2550 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 TUBB1P2-201ENST00000422712 1306 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 AHCYP2-201ENST00000430630 1300 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 TUBB1P1-201ENST00000503144 1300 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 FAM86MP-201ENST00000340703 885 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 AL355994.2-201ENST00000447882 704 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 DUX4L47-201ENST00000566374 394 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 AC010328.2-201ENST00000597698 1111 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 AC055811.4-201ENST00000624039 1754 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 KRT8P44-201ENST00000441609 1350 ntBASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC60Q8IWA6 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 TPM3P8-201ENST00000330554 643 ntBASIC17■□□□□ 0.31
CCDC60Q8IWA6 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 CD8B2-202ENST00000417670 633 ntBASIC17■□□□□ 0.31
CCDC60Q8IWA6 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 AC023310.1-201ENST00000554836 735 ntBASIC17■□□□□ 0.31
CCDC60Q8IWA6 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 AC004466.1-201ENST00000599515 1080 ntBASIC17■□□□□ 0.31
CCDC60Q8IWA6 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17■□□□□ 0.31
CCDC60Q8IWA6 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms