Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH6P52701 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 NCR3-202ENST00000376071 541 ntTSL 5 BASIC20.92■□□□□ 0.94
MSH6P52701 AL583805.1-201ENST00000391389 531 ntBASIC20.92■□□□□ 0.94
MSH6P52701 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH6P52701 AL627422.1-201ENST00000434104 580 ntBASIC20.92■□□□□ 0.94
MSH6P52701 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH6P52701 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
MSH6P52701 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC20.92■□□□□ 0.94
MSH6P52701 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC20.92■□□□□ 0.94
MSH6P52701 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC20.92■□□□□ 0.94
MSH6P52701 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
MSH6P52701 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
MSH6P52701 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC20.92■□□□□ 0.94
MSH6P52701 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH6P52701 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH6P52701 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.91■□□□□ 0.94
MSH6P52701 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC20.91■□□□□ 0.94
MSH6P52701 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH6P52701 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH6P52701 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 PSMD4P1-201ENST00000433951 1109 ntBASIC20.91■□□□□ 0.94
MSH6P52701 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC20.91■□□□□ 0.94
MSH6P52701 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 PHBP15-201ENST00000574228 665 ntBASIC20.91■□□□□ 0.94
MSH6P52701 MIR4522-201ENST00000584932 87 ntBASIC20.91■□□□□ 0.94
MSH6P52701 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC20.91■□□□□ 0.94
MSH6P52701 MIR6769A-201ENST00000617340 73 ntBASIC20.91■□□□□ 0.94
MSH6P52701 AC005618.3-201ENST00000624928 458 ntBASIC20.91■□□□□ 0.94
MSH6P52701 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
MSH6P52701 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.91■□□□□ 0.94
MSH6P52701 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH6P52701 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH6P52701 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
MSH6P52701 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH6P52701 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC20.9■□□□□ 0.94
MSH6P52701 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH6P52701 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH6P52701 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MSH6P52701 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
MSH6P52701 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.9■□□□□ 0.94
MSH6P52701 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH6P52701 AP003398.1-201ENST00000531124 318 ntBASIC20.9■□□□□ 0.94
MSH6P52701 LINC01783-202ENST00000614408 828 ntBASIC20.9■□□□□ 0.94
MSH6P52701 ETV2-207ENST00000619399 994 ntTSL 5 BASIC20.9■□□□□ 0.94
MSH6P52701 BX284668.2-205ENST00000619677 828 ntBASIC20.9■□□□□ 0.94
MSH6P52701 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH6P52701 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MSH6P52701 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
MSH6P52701 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH6P52701 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
MSH6P52701 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSH6P52701 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.94
MSH6P52701 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSH6P52701 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
MSH6P52701 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSH6P52701 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.94
MSH6P52701 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH6P52701 Z69890.1-201ENST00000382990 339 ntBASIC20.89■□□□□ 0.93
MSH6P52701 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSH6P52701 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH6P52701 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC20.89■□□□□ 0.93
MSH6P52701 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC20.89■□□□□ 0.93
MSH6P52701 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC20.89■□□□□ 0.93
MSH6P52701 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC20.89■□□□□ 0.93
MSH6P52701 MIR5196-201ENST00000578146 115 ntBASIC20.89■□□□□ 0.93
MSH6P52701 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC20.89■□□□□ 0.93
MSH6P52701 AC009884.2-201ENST00000603110 324 ntBASIC20.89■□□□□ 0.93
MSH6P52701 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.89■□□□□ 0.93
MSH6P52701 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSH6P52701 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSH6P52701 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
MSH6P52701 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSH6P52701 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms