Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PRKN-208ENST00000610470 531 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 PRKN-209ENST00000612485 225 ntTSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 AC148477.8-201ENST00000624298 468 ntBASIC12.89□□□□□ -0.35
HOXA1P49639 AC010507.1-201ENST00000633895 436 ntBASIC12.89□□□□□ -0.35
HOXA1P49639 AC007064.4-201ENST00000637740 555 ntBASIC12.89□□□□□ -0.35
HOXA1P49639 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
HOXA1P49639 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 AC091951.1-201ENST00000512854 2465 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 AL589702.1-201ENST00000641229 1509 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 IGLL3P-201ENST00000412472 434 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC12.88□□□□□ -0.35
HOXA1P49639 AC093909.1-201ENST00000504731 1122 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 KRT18P56-201ENST00000507275 550 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 NMU-203ENST00000507338 658 ntTSL 3 BASIC12.88□□□□□ -0.35
HOXA1P49639 PRYP6-201ENST00000514804 343 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC12.88□□□□□ -0.35
HOXA1P49639 UNC93B6-202ENST00000528242 690 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC12.88□□□□□ -0.35
HOXA1P49639 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC12.88□□□□□ -0.35
HOXA1P49639 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 AC023141.13-201ENST00000604991 943 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 AL773604.1-201ENST00000617417 272 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC12.88□□□□□ -0.35
HOXA1P49639 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
HOXA1P49639 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC12.88□□□□□ -0.35
HOXA1P49639 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.88□□□□□ -0.35
HOXA1P49639 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC12.88□□□□□ -0.35
HOXA1P49639 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 AC089987.1-201ENST00000551654 2209 ntBASIC12.88□□□□□ -0.35
HOXA1P49639 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXA1P49639 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
HOXA1P49639 AC092127.1-201ENST00000567093 3455 ntBASIC12.87□□□□□ -0.35
HOXA1P49639 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC12.87□□□□□ -0.35
HOXA1P49639 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC12.87□□□□□ -0.35
HOXA1P49639 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
HOXA1P49639 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
HOXA1P49639 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXA1P49639 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC12.87□□□□□ -0.35
HOXA1P49639 AJ011931.1-201ENST00000618749 2492 ntBASIC12.87□□□□□ -0.35
HOXA1P49639 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
HOXA1P49639 AC083964.2-201ENST00000623988 2396 ntBASIC12.87□□□□□ -0.35
HOXA1P49639 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HOXA1P49639 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HOXA1P49639 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms