Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
SOX3P41225 MEP1AP4-201ENST00000423244 1087 ntBASIC14.56□□□□□ -0.08
SOX3P41225 KRT18P64-201ENST00000434946 1219 ntBASIC14.56□□□□□ -0.08
SOX3P41225 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.56□□□□□ -0.08
SOX3P41225 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 TP53TG3HP-202ENST00000569755 579 ntBASIC14.56□□□□□ -0.08
SOX3P41225 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.56□□□□□ -0.08
SOX3P41225 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.56□□□□□ -0.08
SOX3P41225 CHCHD2P3-201ENST00000603038 451 ntBASIC14.56□□□□□ -0.08
SOX3P41225 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 AL365209.1-201ENST00000624418 6473 ntBASIC14.56□□□□□ -0.08
SOX3P41225 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX3P41225 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX3P41225 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 AC007686.3-201ENST00000619017 3487 ntBASIC14.55□□□□□ -0.08
SOX3P41225 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SOX3P41225 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX3P41225 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SOX3P41225 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.55□□□□□ -0.08
SOX3P41225 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX3P41225 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.55□□□□□ -0.08
SOX3P41225 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.55□□□□□ -0.08
SOX3P41225 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 SLED1-202ENST00000512051 380 ntBASIC14.55□□□□□ -0.08
SOX3P41225 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX3P41225 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.55□□□□□ -0.08
SOX3P41225 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
SOX3P41225 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.55□□□□□ -0.08
SOX3P41225 AC007431.3-201ENST00000623221 587 ntBASIC14.55□□□□□ -0.08
SOX3P41225 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX3P41225 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX3P41225 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX3P41225 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.55□□□□□ -0.08
SOX3P41225 AC007292.2-201ENST00000593524 1812 ntBASIC14.55□□□□□ -0.08
SOX3P41225 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
SOX3P41225 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.54□□□□□ -0.08
SOX3P41225 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SOX3P41225 RN7SL692P-201ENST00000464677 288 ntBASIC14.54□□□□□ -0.08
SOX3P41225 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms