Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
CUX1P39880 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC25.05■■□□□ 1.6
CUX1P39880 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CUX1P39880 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CUX1P39880 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CUX1P39880 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC25.05■■□□□ 1.6
CUX1P39880 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC25.05■■□□□ 1.6
CUX1P39880 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC25.05■■□□□ 1.6
CUX1P39880 MIR3188-201ENST00000583494 85 ntBASIC25.05■■□□□ 1.6
CUX1P39880 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CUX1P39880 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
CUX1P39880 AC009084.3-201ENST00000623356 437 ntBASIC25.05■■□□□ 1.6
CUX1P39880 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CUX1P39880 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CUX1P39880 TMBIM7P-202ENST00000641474 1516 ntBASIC25.05■■□□□ 1.6
CUX1P39880 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC25.05■■□□□ 1.6
CUX1P39880 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC25.04■■□□□ 1.6
CUX1P39880 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC25.04■■□□□ 1.6
CUX1P39880 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC25.04■■□□□ 1.6
CUX1P39880 ORAOV1P1-201ENST00000503108 395 ntBASIC25.04■■□□□ 1.6
CUX1P39880 AC008723.1-201ENST00000506922 207 ntBASIC25.04■■□□□ 1.6
CUX1P39880 AC026410.1-201ENST00000507366 1101 ntBASIC25.04■■□□□ 1.6
CUX1P39880 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC25.04■■□□□ 1.6
CUX1P39880 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC25.04■■□□□ 1.6
CUX1P39880 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC25.04■■□□□ 1.6
CUX1P39880 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC25.04■■□□□ 1.6
CUX1P39880 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC25.04■■□□□ 1.6
CUX1P39880 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
CUX1P39880 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC25.04■■□□□ 1.6
CUX1P39880 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC25.04■■□□□ 1.6
CUX1P39880 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CUX1P39880 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC25.03■■□□□ 1.6
CUX1P39880 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC25.03■■□□□ 1.6
CUX1P39880 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC25.03■■□□□ 1.6
CUX1P39880 FTH1P22-201ENST00000456305 520 ntBASIC25.03■■□□□ 1.6
CUX1P39880 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC25.03■■□□□ 1.6
CUX1P39880 AC027237.1-201ENST00000560942 655 ntBASIC25.03■■□□□ 1.6
CUX1P39880 AC105137.3-201ENST00000617588 984 ntBASIC25.03■■□□□ 1.6
CUX1P39880 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC25.03■■□□□ 1.6
CUX1P39880 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
CUX1P39880 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC25.03■■□□□ 1.6
CUX1P39880 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CUX1P39880 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX1P39880 MBP-201ENST00000354542 575 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX1P39880 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 RPL7P35-201ENST00000446943 740 ntBASIC25.02■■□□□ 1.6
CUX1P39880 PIN4P1-201ENST00000451079 396 ntBASIC25.02■■□□□ 1.6
CUX1P39880 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC25.02■■□□□ 1.6
CUX1P39880 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC25.02■■□□□ 1.6
CUX1P39880 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 AC007292.2-201ENST00000593524 1812 ntBASIC25.02■■□□□ 1.6
CUX1P39880 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC25.02■■□□□ 1.6
CUX1P39880 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
CUX1P39880 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX1P39880 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC25.02■■□□□ 1.6
CUX1P39880 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC25.02■■□□□ 1.6
CUX1P39880 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC25.02■■□□□ 1.6
CUX1P39880 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 DUTP3-201ENST00000450025 415 ntBASIC25.02■■□□□ 1.6
CUX1P39880 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 RN7SL818P-201ENST00000485099 259 ntBASIC25.02■■□□□ 1.6
CUX1P39880 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX1P39880 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC25.02■■□□□ 1.6
CUX1P39880 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX1P39880 RN7SL725P-201ENST00000606439 259 ntBASIC25.02■■□□□ 1.6
CUX1P39880 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC25.01■■□□□ 1.59
CUX1P39880 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CUX1P39880 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CUX1P39880 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms