Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CIITAP33076 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 AL359258.3-201ENST00000622910 2331 ntBASIC17.25■□□□□ 0.35
CIITAP33076 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.25■□□□□ 0.35
CIITAP33076 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CIITAP33076 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 ANKRD19P-201ENST00000338192 862 ntBASIC17.25■□□□□ 0.35
CIITAP33076 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CIITAP33076 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 CNN2P8-201ENST00000421872 913 ntBASIC17.25■□□□□ 0.35
CIITAP33076 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.25■□□□□ 0.35
CIITAP33076 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CIITAP33076 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.25■□□□□ 0.35
CIITAP33076 SNX29P1-201ENST00000548357 1007 ntBASIC17.25■□□□□ 0.35
CIITAP33076 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.25■□□□□ 0.35
CIITAP33076 RN7SL48P-201ENST00000579283 293 ntBASIC17.25■□□□□ 0.35
CIITAP33076 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 AC244669.2-201ENST00000612320 853 ntBASIC17.25■□□□□ 0.35
CIITAP33076 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.25■□□□□ 0.35
CIITAP33076 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CIITAP33076 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.24■□□□□ 0.35
CIITAP33076 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CIITAP33076 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
CIITAP33076 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CIITAP33076 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CIITAP33076 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.24■□□□□ 0.35
CIITAP33076 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.24■□□□□ 0.35
CIITAP33076 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CIITAP33076 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.24■□□□□ 0.35
CIITAP33076 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.24■□□□□ 0.35
CIITAP33076 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.24■□□□□ 0.35
CIITAP33076 RPL7P3-201ENST00000441388 714 ntBASIC17.24■□□□□ 0.35
CIITAP33076 AC234783.1-201ENST00000441761 496 ntBASIC17.24■□□□□ 0.35
CIITAP33076 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.24■□□□□ 0.35
CIITAP33076 AC119751.2-201ENST00000504529 210 ntBASIC17.24■□□□□ 0.35
CIITAP33076 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.24■□□□□ 0.35
CIITAP33076 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.24■□□□□ 0.35
CIITAP33076 KRT90P-201ENST00000549264 1064 ntBASIC17.24■□□□□ 0.35
CIITAP33076 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.24■□□□□ 0.35
CIITAP33076 LRRC59-203ENST00000576448 1531 ntBASIC17.24■□□□□ 0.35
CIITAP33076 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.24■□□□□ 0.35
CIITAP33076 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CIITAP33076 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CIITAP33076 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CIITAP33076 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.23■□□□□ 0.35
CIITAP33076 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.23■□□□□ 0.35
CIITAP33076 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.23■□□□□ 0.35
CIITAP33076 AC104640.1-201ENST00000562617 2109 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms