Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
HOXD3P31249 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC11.94□□□□□ -0.5
HOXD3P31249 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC11.94□□□□□ -0.5
HOXD3P31249 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
HOXD3P31249 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC11.94□□□□□ -0.5
HOXD3P31249 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HOXD3P31249 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC11.94□□□□□ -0.5
HOXD3P31249 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 GPX4-206ENST00000588919 803 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC11.94□□□□□ -0.5
HOXD3P31249 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXD3P31249 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC11.94□□□□□ -0.5
HOXD3P31249 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 AMT-232ENST00000636199 1546 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXD3P31249 AC007950.2-201ENST00000615045 2347 ntBASIC11.94□□□□□ -0.5
HOXD3P31249 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 WARS-232ENST00000556645 2508 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXD3P31249 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXD3P31249 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXD3P31249 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXD3P31249 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
HOXD3P31249 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 AL596257.1-201ENST00000641463 2694 ntBASIC11.93□□□□□ -0.5
HOXD3P31249 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 APOA1-205ENST00000375329 927 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 NME6-203ENST00000415644 849 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 SOCS2P1-201ENST00000417727 557 ntBASIC11.93□□□□□ -0.5
HOXD3P31249 ACTBP11-201ENST00000436287 1126 ntBASIC11.93□□□□□ -0.5
HOXD3P31249 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXD3P31249 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXD3P31249 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC11.93□□□□□ -0.5
HOXD3P31249 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC11.93□□□□□ -0.5
HOXD3P31249 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXD3P31249 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 TBCB-211ENST00000589996 724 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXD3P31249 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXD3P31249 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 FUK-207ENST00000571514 3054 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXD3P31249 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXD3P31249 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXD3P31249 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms