Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.44□□□□□ -0.1
COL5A1P20908 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC14.43□□□□□ -0.1
COL5A1P20908 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 RN7SKP230-201ENST00000365642 335 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.43□□□□□ -0.1
COL5A1P20908 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 KRT18P36-201ENST00000411618 1276 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC14.43□□□□□ -0.1
COL5A1P20908 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 AC114501.1-201ENST00000445949 172 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 RN7SL8P-201ENST00000461771 266 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC14.43□□□□□ -0.1
COL5A1P20908 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC14.43□□□□□ -0.1
COL5A1P20908 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 AL157813.1-201ENST00000612996 587 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC14.43□□□□□ -0.1
COL5A1P20908 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL5A1P20908 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
COL5A1P20908 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.43□□□□□ -0.1
COL5A1P20908 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL5A1P20908 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.43□□□□□ -0.1
COL5A1P20908 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.43□□□□□ -0.1
COL5A1P20908 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.43□□□□□ -0.1
COL5A1P20908 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC14.43□□□□□ -0.1
COL5A1P20908 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.43□□□□□ -0.1
COL5A1P20908 MIR3147-201ENST00000577811 66 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 AC008805.1-201ENST00000590892 364 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 AC138894.2-201ENST00000602838 371 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC14.43□□□□□ -0.1
COL5A1P20908 MEG3_2.1-201ENST00000611456 105 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL5A1P20908 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.43□□□□□ -0.1
COL5A1P20908 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.42□□□□□ -0.1
COL5A1P20908 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.42□□□□□ -0.1
COL5A1P20908 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.42□□□□□ -0.1
COL5A1P20908 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL5A1P20908 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 AL627389.1-201ENST00000413508 1182 ntBASIC14.42□□□□□ -0.1
COL5A1P20908 AC026434.2-201ENST00000506094 1078 ntBASIC14.42□□□□□ -0.1
COL5A1P20908 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.42□□□□□ -0.1
COL5A1P20908 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC14.42□□□□□ -0.1
COL5A1P20908 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
COL5A1P20908 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.42□□□□□ -0.1
COL5A1P20908 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC14.42□□□□□ -0.1
COL5A1P20908 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 AC073352.2-201ENST00000609385 439 ntBASIC14.42□□□□□ -0.1
COL5A1P20908 AC103691.2-201ENST00000618824 433 ntBASIC14.42□□□□□ -0.1
COL5A1P20908 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
COL5A1P20908 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
COL5A1P20908 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL5A1P20908 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.41□□□□□ -0.1
COL5A1P20908 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.41□□□□□ -0.1
COL5A1P20908 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
COL5A1P20908 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms