Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.68□□□□□ -0.06
SDC1P18827 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.68□□□□□ -0.06
SDC1P18827 TREML5P-201ENST00000421694 576 ntBASIC14.68□□□□□ -0.06
SDC1P18827 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SDC1P18827 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.68□□□□□ -0.06
SDC1P18827 AC067863.1-201ENST00000494933 530 ntBASIC14.68□□□□□ -0.06
SDC1P18827 AC097493.3-201ENST00000509725 367 ntBASIC14.68□□□□□ -0.06
SDC1P18827 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SDC1P18827 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.68□□□□□ -0.06
SDC1P18827 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.68□□□□□ -0.06
SDC1P18827 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.68□□□□□ -0.06
SDC1P18827 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.68□□□□□ -0.06
SDC1P18827 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.68□□□□□ -0.06
SDC1P18827 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.68□□□□□ -0.06
SDC1P18827 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.68□□□□□ -0.06
SDC1P18827 AC004461.2-201ENST00000629517 803 ntBASIC14.68□□□□□ -0.06
SDC1P18827 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
SDC1P18827 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SDC1P18827 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
SDC1P18827 AC005089.1-201ENST00000619486 2241 ntBASIC14.68□□□□□ -0.06
SDC1P18827 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.67□□□□□ -0.06
SDC1P18827 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SDC1P18827 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.67□□□□□ -0.06
SDC1P18827 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SDC1P18827 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SDC1P18827 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SDC1P18827 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.67□□□□□ -0.06
SDC1P18827 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.67□□□□□ -0.06
SDC1P18827 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.67□□□□□ -0.06
SDC1P18827 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.67□□□□□ -0.06
SDC1P18827 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.67□□□□□ -0.06
SDC1P18827 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.67□□□□□ -0.06
SDC1P18827 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.67□□□□□ -0.06
SDC1P18827 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 AC092337.1-201ENST00000568699 1129 ntBASIC14.67□□□□□ -0.06
SDC1P18827 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.67□□□□□ -0.06
SDC1P18827 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.67□□□□□ -0.06
SDC1P18827 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.67□□□□□ -0.06
SDC1P18827 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SDC1P18827 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.67□□□□□ -0.06
SDC1P18827 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
SDC1P18827 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.67□□□□□ -0.06
SDC1P18827 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.67□□□□□ -0.06
SDC1P18827 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SDC1P18827 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.67□□□□□ -0.06
SDC1P18827 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.66□□□□□ -0.06
SDC1P18827 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SDC1P18827 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.66□□□□□ -0.06
SDC1P18827 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SDC1P18827 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SDC1P18827 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SDC1P18827 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.66□□□□□ -0.06
SDC1P18827 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SDC1P18827 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.66□□□□□ -0.06
SDC1P18827 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.66□□□□□ -0.06
SDC1P18827 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.66□□□□□ -0.06
SDC1P18827 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.66□□□□□ -0.06
SDC1P18827 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms