Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.88□□□□□ -0.03
HOXC4P09017 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HOXC4P09017 AC079178.1-201ENST00000420915 656 ntBASIC14.88□□□□□ -0.03
HOXC4P09017 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC14.88□□□□□ -0.03
HOXC4P09017 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC14.88□□□□□ -0.03
HOXC4P09017 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC14.88□□□□□ -0.03
HOXC4P09017 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.88□□□□□ -0.03
HOXC4P09017 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HOXC4P09017 CHMP1AP1-201ENST00000445563 662 ntBASIC14.88□□□□□ -0.03
HOXC4P09017 AL591846.1-201ENST00000451736 433 ntBASIC14.88□□□□□ -0.03
HOXC4P09017 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.88□□□□□ -0.03
HOXC4P09017 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.88□□□□□ -0.03
HOXC4P09017 AP003171.2-201ENST00000528208 925 ntBASIC14.88□□□□□ -0.03
HOXC4P09017 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.88□□□□□ -0.03
HOXC4P09017 AC073413.1-201ENST00000603927 732 ntBASIC14.88□□□□□ -0.03
HOXC4P09017 AC091271.1-201ENST00000611877 1162 ntBASIC14.88□□□□□ -0.03
HOXC4P09017 AC244157.2-201ENST00000616239 1006 ntBASIC14.88□□□□□ -0.03
HOXC4P09017 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXC4P09017 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXC4P09017 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HOXC4P09017 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
HOXC4P09017 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HOXC4P09017 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXC4P09017 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXC4P09017 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
HOXC4P09017 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXC4P09017 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HOXC4P09017 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
HOXC4P09017 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXC4P09017 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXC4P09017 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 MIR326-201ENST00000362220 95 ntBASIC14.87□□□□□ -0.03
HOXC4P09017 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 AC108725.1-201ENST00000495472 409 ntBASIC14.87□□□□□ -0.03
HOXC4P09017 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXC4P09017 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXC4P09017 MIR4741-201ENST00000579822 90 ntBASIC14.87□□□□□ -0.03
HOXC4P09017 MIR4525-201ENST00000580000 75 ntBASIC14.87□□□□□ -0.03
HOXC4P09017 PPY2P-201ENST00000582808 702 ntBASIC14.87□□□□□ -0.03
HOXC4P09017 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.87□□□□□ -0.03
HOXC4P09017 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXC4P09017 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXC4P09017 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXC4P09017 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXC4P09017 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 FKBP4P6-201ENST00000457486 1332 ntBASIC14.87□□□□□ -0.03
HOXC4P09017 AC136621.1-201ENST00000624017 2304 ntBASIC14.87□□□□□ -0.03
HOXC4P09017 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXC4P09017 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HOXC4P09017 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
HOXC4P09017 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXC4P09017 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXC4P09017 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXC4P09017 AL023775.1-201ENST00000454907 1746 ntBASIC14.86□□□□□ -0.03
HOXC4P09017 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HOXC4P09017 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 AP000845.1-201ENST00000581677 2131 ntBASIC14.86□□□□□ -0.03
HOXC4P09017 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms