Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
SPTA1P02549 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SPTA1P02549 AL139384.1-201ENST00000612143 3047 ntBASIC13.91□□□□□ -0.18
SPTA1P02549 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SPTA1P02549 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC13.91□□□□□ -0.18
SPTA1P02549 WT1-AS_6.1-201ENST00000614919 121 ntBASIC13.91□□□□□ -0.18
SPTA1P02549 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC13.91□□□□□ -0.18
SPTA1P02549 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SPTA1P02549 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SPTA1P02549 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC13.9□□□□□ -0.18
SPTA1P02549 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.9□□□□□ -0.18
SPTA1P02549 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.9□□□□□ -0.18
SPTA1P02549 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 RPS9P1-201ENST00000419943 583 ntBASIC13.9□□□□□ -0.18
SPTA1P02549 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.9□□□□□ -0.18
SPTA1P02549 AL157792.1-201ENST00000488281 530 ntBASIC13.9□□□□□ -0.18
SPTA1P02549 AL391280.1-201ENST00000506969 1062 ntBASIC13.9□□□□□ -0.18
SPTA1P02549 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
SPTA1P02549 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.9□□□□□ -0.18
SPTA1P02549 AC025271.4-201ENST00000621477 1726 ntBASIC13.9□□□□□ -0.18
SPTA1P02549 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.9□□□□□ -0.18
SPTA1P02549 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
SPTA1P02549 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SPTA1P02549 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
SPTA1P02549 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC13.9□□□□□ -0.18
SPTA1P02549 GHSR-202ENST00000427970 912 ntBASIC13.9□□□□□ -0.18
SPTA1P02549 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
SPTA1P02549 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.9□□□□□ -0.18
SPTA1P02549 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.9□□□□□ -0.18
SPTA1P02549 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC13.9□□□□□ -0.18
SPTA1P02549 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC13.9□□□□□ -0.18
SPTA1P02549 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SPTA1P02549 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SPTA1P02549 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
SPTA1P02549 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.89□□□□□ -0.19
SPTA1P02549 AC005915.1-201ENST00000624912 2018 ntBASIC13.89□□□□□ -0.19
SPTA1P02549 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
SPTA1P02549 GMFG-209ENST00000600322 622 ntTSL 5 BASIC13.89□□□□□ -0.19
SPTA1P02549 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 KRT8P21-201ENST00000430398 1491 ntBASIC13.89□□□□□ -0.19
SPTA1P02549 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SPTA1P02549 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.89□□□□□ -0.19
SPTA1P02549 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.89□□□□□ -0.19
SPTA1P02549 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SPTA1P02549 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SPTA1P02549 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC13.89□□□□□ -0.19
SPTA1P02549 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC13.89□□□□□ -0.19
SPTA1P02549 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 AC007881.3-201ENST00000608897 607 ntBASIC13.89□□□□□ -0.19
SPTA1P02549 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC13.89□□□□□ -0.19
SPTA1P02549 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SPTA1P02549 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.89□□□□□ -0.19
SPTA1P02549 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms