Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.48□□□□□ -0.41
HMGB3O15347 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HMGB3O15347 MAP3K9-205ENST00000554752 11169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.48□□□□□ -0.41
HMGB3O15347 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC12.48□□□□□ -0.41
HMGB3O15347 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.48□□□□□ -0.41
HMGB3O15347 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC12.48□□□□□ -0.41
HMGB3O15347 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 AP001282.1-201ENST00000531301 1499 ntBASIC12.47□□□□□ -0.41
HMGB3O15347 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 AP002008.2-201ENST00000635926 4870 ntBASIC12.47□□□□□ -0.41
HMGB3O15347 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC12.47□□□□□ -0.41
HMGB3O15347 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
HMGB3O15347 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC12.47□□□□□ -0.41
HMGB3O15347 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC12.47□□□□□ -0.41
HMGB3O15347 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC12.47□□□□□ -0.41
HMGB3O15347 PPOX-219ENST00000544598 813 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC12.47□□□□□ -0.41
HMGB3O15347 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC12.47□□□□□ -0.41
HMGB3O15347 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC12.47□□□□□ -0.41
HMGB3O15347 AL732292.2-201ENST00000609649 430 ntBASIC12.47□□□□□ -0.41
HMGB3O15347 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC12.47□□□□□ -0.41
HMGB3O15347 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 ZNF75D-202ENST00000370766 5592 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC12.47□□□□□ -0.41
HMGB3O15347 PXMP4-203ENST00000409299 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 PCDHGA8-202ENST00000610569 6480 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HMGB3O15347 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 DNMT3A-201ENST00000264709 9501 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HMGB3O15347 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
HMGB3O15347 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.46□□□□□ -0.41
HMGB3O15347 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.46□□□□□ -0.41
HMGB3O15347 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC12.46□□□□□ -0.41
HMGB3O15347 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
HMGB3O15347 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
HMGB3O15347 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.46□□□□□ -0.41
HMGB3O15347 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
HMGB3O15347 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
HMGB3O15347 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 RNU1-129P-201ENST00000384064 167 ntBASIC12.46□□□□□ -0.41
HMGB3O15347 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms