Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC005562.1-201ENST00000583030 3219 ntBASIC11.33□□□□□ -0.6
SMKR1H3BMG3 REXO1L2P-201ENST00000425429 2069 ntBASIC11.33□□□□□ -0.6
SMKR1H3BMG3 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 HIST2H3DP1-201ENST00000401004 416 ntBASIC11.33□□□□□ -0.6
SMKR1H3BMG3 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 ATP5G2P1-201ENST00000433580 426 ntBASIC11.33□□□□□ -0.6
SMKR1H3BMG3 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 ETFA-208ENST00000559602 792 ntTSL 3 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AC087388.1-201ENST00000571370 1112 ntBASIC11.33□□□□□ -0.6
SMKR1H3BMG3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 CD7-202ENST00000578509 925 ntTSL 3 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AL356488.2-201ENST00000602755 427 ntBASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AL450472.2-201ENST00000603663 1156 ntBASIC11.33□□□□□ -0.6
SMKR1H3BMG3 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
SMKR1H3BMG3 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 AC092135.3-201ENST00000624151 1846 ntBASIC11.32□□□□□ -0.6
SMKR1H3BMG3 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 AP002414.3-201ENST00000589352 1468 ntBASIC11.32□□□□□ -0.6
SMKR1H3BMG3 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 MOK-208ENST00000519058 917 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms