Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 BNIP3P42-201ENST00000454982 569 ntBASIC14.17□□□□□ -0.14
LRFN1Q9P244 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 BNIP3P29-201ENST00000598302 571 ntBASIC14.17□□□□□ -0.14
LRFN1Q9P244 AC011447.5-201ENST00000616168 564 ntBASIC14.17□□□□□ -0.14
LRFN1Q9P244 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 AC092127.1-201ENST00000567093 3455 ntBASIC14.17□□□□□ -0.14
LRFN1Q9P244 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRFN1Q9P244 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
LRFN1Q9P244 AC093525.8-201ENST00000624099 1342 ntBASIC14.16□□□□□ -0.14
LRFN1Q9P244 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.16□□□□□ -0.14
LRFN1Q9P244 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LRFN1Q9P244 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LRFN1Q9P244 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
LRFN1Q9P244 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LRFN1Q9P244 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LRFN1Q9P244 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
LRFN1Q9P244 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LRFN1Q9P244 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LRFN1Q9P244 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LRFN1Q9P244 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LRFN1Q9P244 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
LRFN1Q9P244 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LRFN1Q9P244 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms