Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 AL080243.2-201ENST00000418783 582 ntBASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 AL079307.3-201ENST00000556114 283 ntBASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 SNHG9-202ENST00000564014 471 ntBASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 AL596442.2-201ENST00000610240 980 ntBASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 AL359258.3-201ENST00000622910 2331 ntBASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 AC084364.1-201ENST00000551967 1556 ntBASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 AC109322.1-201ENST00000524499 1264 ntBASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM56Q9BRZ2 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
TRIM56Q9BRZ2 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms