Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC13.15□□□□□ -0.3
COL12A1Q99715 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC13.15□□□□□ -0.3
COL12A1Q99715 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
COL12A1Q99715 MT3-203ENST00000565838 421 ntTSL 3 BASIC13.15□□□□□ -0.3
COL12A1Q99715 DUX4L46-201ENST00000566845 751 ntBASIC13.15□□□□□ -0.3
COL12A1Q99715 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
COL12A1Q99715 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC13.15□□□□□ -0.3
COL12A1Q99715 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC13.15□□□□□ -0.3
COL12A1Q99715 MIR5001-201ENST00000580185 100 ntBASIC13.15□□□□□ -0.3
COL12A1Q99715 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.15□□□□□ -0.3
COL12A1Q99715 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC13.15□□□□□ -0.3
COL12A1Q99715 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.15□□□□□ -0.31
COL12A1Q99715 AC010491.1-201ENST00000563101 2797 ntBASIC13.15□□□□□ -0.31
COL12A1Q99715 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC13.14□□□□□ -0.31
COL12A1Q99715 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
COL12A1Q99715 AC010900.1-201ENST00000449849 1296 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 AC026470.1-201ENST00000478038 846 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC13.14□□□□□ -0.31
COL12A1Q99715 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.14□□□□□ -0.31
COL12A1Q99715 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC13.14□□□□□ -0.31
COL12A1Q99715 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13.14□□□□□ -0.31
COL12A1Q99715 KRT18P9-201ENST00000604826 1300 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.14□□□□□ -0.31
COL12A1Q99715 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 SHC1P1-201ENST00000425230 1745 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
COL12A1Q99715 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.14□□□□□ -0.31
COL12A1Q99715 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 RN7SKP175-201ENST00000408472 289 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC13.14□□□□□ -0.31
COL12A1Q99715 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC13.14□□□□□ -0.31
COL12A1Q99715 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC13.14□□□□□ -0.31
COL12A1Q99715 AC063952.3-201ENST00000467756 308 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC13.14□□□□□ -0.31
COL12A1Q99715 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC13.14□□□□□ -0.31
COL12A1Q99715 AC009560.1-201ENST00000620208 434 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 AP001184.1-201ENST00000637936 376 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC13.14□□□□□ -0.31
COL12A1Q99715 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.14□□□□□ -0.31
COL12A1Q99715 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
COL12A1Q99715 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.14□□□□□ -0.31
COL12A1Q99715 MDH2-205ENST00000461263 648 ntTSL 2 BASIC13.14□□□□□ -0.31
COL12A1Q99715 CTBP2P6-201ENST00000526402 1229 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 AC142086.5-202ENST00000562500 217 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC13.14□□□□□ -0.31
COL12A1Q99715 MIR4472-1-201ENST00000584349 80 ntBASIC13.14□□□□□ -0.31
COL12A1Q99715 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC13.14□□□□□ -0.31
COL12A1Q99715 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC13.14□□□□□ -0.31
COL12A1Q99715 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL12A1Q99715 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
COL12A1Q99715 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 CCL25-202ENST00000315626 450 ntTSL 2 BASIC13.13□□□□□ -0.31
COL12A1Q99715 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC13.13□□□□□ -0.31
COL12A1Q99715 PUDPP3-201ENST00000445368 636 ntBASIC13.13□□□□□ -0.31
COL12A1Q99715 AC092612.1-201ENST00000514501 998 ntBASIC13.13□□□□□ -0.31
COL12A1Q99715 NEU3-207ENST00000534628 746 ntTSL 2 BASIC13.13□□□□□ -0.31
COL12A1Q99715 RN7SL470P-201ENST00000583069 259 ntBASIC13.13□□□□□ -0.31
COL12A1Q99715 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.13□□□□□ -0.31
COL12A1Q99715 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
COL12A1Q99715 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.13□□□□□ -0.31
COL12A1Q99715 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
COL12A1Q99715 AC055811.4-201ENST00000624039 1754 ntBASIC13.13□□□□□ -0.31
COL12A1Q99715 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms