Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
ERCC4Q92889 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
ERCC4Q92889 AL353705.2-201ENST00000428243 662 ntBASIC17.56■□□□□ 0.4
ERCC4Q92889 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.56■□□□□ 0.4
ERCC4Q92889 MTND6P24-201ENST00000440466 518 ntBASIC17.56■□□□□ 0.4
ERCC4Q92889 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.56■□□□□ 0.4
ERCC4Q92889 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
ERCC4Q92889 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.56■□□□□ 0.4
ERCC4Q92889 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.56■□□□□ 0.4
ERCC4Q92889 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.56■□□□□ 0.4
ERCC4Q92889 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
ERCC4Q92889 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 MROH4P-201ENST00000431302 1578 ntBASIC17.56■□□□□ 0.4
ERCC4Q92889 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ERCC4Q92889 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.56■□□□□ 0.4
ERCC4Q92889 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 AC097359.2-201ENST00000604992 2389 ntBASIC17.55■□□□□ 0.4
ERCC4Q92889 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.55■□□□□ 0.4
ERCC4Q92889 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.55■□□□□ 0.4
ERCC4Q92889 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 AC005089.1-201ENST00000619486 2241 ntBASIC17.55■□□□□ 0.4
ERCC4Q92889 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
ERCC4Q92889 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
ERCC4Q92889 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC17.55■□□□□ 0.4
ERCC4Q92889 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.55■□□□□ 0.4
ERCC4Q92889 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.55■□□□□ 0.4
ERCC4Q92889 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.55■□□□□ 0.4
ERCC4Q92889 AC026150.2-201ENST00000564693 1156 ntBASIC17.55■□□□□ 0.4
ERCC4Q92889 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.55■□□□□ 0.4
ERCC4Q92889 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.55■□□□□ 0.4
ERCC4Q92889 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
ERCC4Q92889 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.55■□□□□ 0.4
ERCC4Q92889 RN7SL828P-201ENST00000607615 303 ntBASIC17.55■□□□□ 0.4
ERCC4Q92889 AC023511.2-201ENST00000618803 211 ntBASIC17.55■□□□□ 0.4
ERCC4Q92889 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.55■□□□□ 0.4
ERCC4Q92889 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.55■□□□□ 0.4
ERCC4Q92889 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
ERCC4Q92889 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.55■□□□□ 0.4
ERCC4Q92889 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC17.55■□□□□ 0.4
ERCC4Q92889 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
ERCC4Q92889 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
ERCC4Q92889 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
ERCC4Q92889 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
ERCC4Q92889 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ERCC4Q92889 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.54■□□□□ 0.4
ERCC4Q92889 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC17.54■□□□□ 0.4
ERCC4Q92889 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
ERCC4Q92889 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
ERCC4Q92889 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ERCC4Q92889 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.54■□□□□ 0.4
ERCC4Q92889 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.54■□□□□ 0.4
ERCC4Q92889 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC17.54■□□□□ 0.4
ERCC4Q92889 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ERCC4Q92889 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
ERCC4Q92889 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.54■□□□□ 0.4
ERCC4Q92889 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.54■□□□□ 0.4
ERCC4Q92889 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.54■□□□□ 0.4
ERCC4Q92889 MIR4453-201ENST00000584019 89 ntBASIC17.54■□□□□ 0.4
ERCC4Q92889 AC010327.4-202ENST00000591484 748 ntBASIC17.54■□□□□ 0.4
ERCC4Q92889 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ERCC4Q92889 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms