Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 AC007292.2-201ENST00000593524 1812 ntBASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.52□□□□□ -0.24
CCDC54Q8NEL0 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 SPDYE14P-201ENST00000442619 822 ntBASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 AC026150.2-201ENST00000564693 1156 ntBASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 AC015910.1-201ENST00000579400 975 ntBASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 AP001059.3-201ENST00000619053 235 ntBASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CCDC54Q8NEL0 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 ST20-AS1-201ENST00000560255 4223 ntBASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AL122018.1-201ENST00000446607 2310 ntBASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 CETN4P-206ENST00000642099 2168 ntBASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 Z97205.2-201ENST00000564697 1639 ntBASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms