Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 HLA-J-204ENST00000495278 958 ntBASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SMC1BQ8NDV3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SMC1BQ8NDV3 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SMC1BQ8NDV3 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SMC1BQ8NDV3 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.08■□□□□ 0.49
SMC1BQ8NDV3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
SMC1BQ8NDV3 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
SMC1BQ8NDV3 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SMC1BQ8NDV3 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 AC026410.1-201ENST00000507366 1101 ntBASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 SCARNA21-201ENST00000517026 139 ntBASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 AC138466.3-201ENST00000619983 221 ntBASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.08■□□□□ 0.48
SMC1BQ8NDV3 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 MRPL37P1-201ENST00000592451 1337 ntBASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 SERBP1P2-201ENST00000436888 1164 ntBASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 AC006158.1-201ENST00000610661 249 ntBASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SMC1BQ8NDV3 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 AC090502.4-201ENST00000551714 1386 ntBASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms