Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 PTK2-225ENST00000520892 571 ntTSL 4 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 AL109837.1-201ENST00000603272 613 ntBASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 RPL35-206ENST00000629845 340 ntTSL 5 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT28Q7Z3Y7 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 AP000356.3-201ENST00000382243 753 ntBASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 RPL8P2-201ENST00000430538 502 ntBASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 AC008825.2-201ENST00000603374 718 ntBASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 MEG3_2.1-201ENST00000611456 105 ntBASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
KRT28Q7Z3Y7 FAM90A2P-201ENST00000511144 1395 ntBASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 FAM90A25P-201ENST00000528404 1395 ntBASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 AL137783.1-201ENST00000623494 1896 ntBASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 AC006058.4-201ENST00000624016 1670 ntBASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 AC078875.1-201ENST00000431907 724 ntBASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 AC026320.2-201ENST00000434379 478 ntBASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
KRT28Q7Z3Y7 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.45■□□□□ 0.86
KRT28Q7Z3Y7 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
KRT28Q7Z3Y7 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
KRT28Q7Z3Y7 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.45■□□□□ 0.86
KRT28Q7Z3Y7 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.45■□□□□ 0.86
KRT28Q7Z3Y7 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT28Q7Z3Y7 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
KRT28Q7Z3Y7 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
KRT28Q7Z3Y7 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms