Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TMEM261P1-201ENST00000604899 340 ntBASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AC138969.3-201ENST00000546612 1459 ntBASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AC138932.2-201ENST00000548268 1459 ntBASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AC126755.4-201ENST00000549796 1459 ntBASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 BCYRN1-201ENST00000418539 200 ntBASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 RN7SL589P-201ENST00000481268 310 ntBASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.9□□□□□ -0.34
PDLIM3Q53GG5 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
PDLIM3Q53GG5 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.9□□□□□ -0.35
PDLIM3Q53GG5 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
PDLIM3Q53GG5 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
PDLIM3Q53GG5 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AC138035.3-201ENST00000622706 2791 ntBASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms