Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC58Q4VC31 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC58Q4VC31 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC58Q4VC31 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC58Q4VC31 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CCDC58Q4VC31 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC58Q4VC31 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC58Q4VC31 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.89□□□□□ -0.19
CCDC58Q4VC31 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AL136982.4-201ENST00000437689 1740 ntBASIC13.88□□□□□ -0.19
CCDC58Q4VC31 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AL139010.1-201ENST00000454878 894 ntBASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AC093909.1-201ENST00000504731 1122 ntBASIC13.88□□□□□ -0.19
CCDC58Q4VC31 RNA5SP415-201ENST00000517246 115 ntBASIC13.88□□□□□ -0.19
CCDC58Q4VC31 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 KRT19P2-202ENST00000557173 1012 ntBASIC13.88□□□□□ -0.19
CCDC58Q4VC31 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AC068137.2-201ENST00000605408 478 ntBASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AC012313.10-201ENST00000623509 926 ntBASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AC116407.3-201ENST00000623905 1129 ntBASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 FOXO1B-201ENST00000504678 1527 ntBASIC13.88□□□□□ -0.19
CCDC58Q4VC31 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 BSG-215ENST00000618006 1329 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CCDC58Q4VC31 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 FAM220BP-201ENST00000377689 816 ntBASIC13.87□□□□□ -0.19
CCDC58Q4VC31 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 IGHV3-22-201ENST00000520721 359 ntBASIC13.87□□□□□ -0.19
CCDC58Q4VC31 RARRES2P8-201ENST00000566335 367 ntBASIC13.87□□□□□ -0.19
CCDC58Q4VC31 AL138918.1-201ENST00000568306 659 ntBASIC13.87□□□□□ -0.19
CCDC58Q4VC31 CALM3-211ENST00000598871 561 ntTSL 4 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC58Q4VC31 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms