Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC10.93□□□□□ -0.66
CKS1BP61024 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC10.93□□□□□ -0.66
CKS1BP61024 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC10.93□□□□□ -0.66
CKS1BP61024 FOSL1P1-201ENST00000511041 816 ntBASIC10.93□□□□□ -0.66
CKS1BP61024 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC10.93□□□□□ -0.66
CKS1BP61024 IRF8-202ENST00000562492 946 ntTSL 3 BASIC10.93□□□□□ -0.66
CKS1BP61024 IGHV3OR16-7-201ENST00000604106 360 ntBASIC10.93□□□□□ -0.66
CKS1BP61024 AC091076.1-201ENST00000610741 619 ntBASIC10.93□□□□□ -0.66
CKS1BP61024 AL121772.3-201ENST00000610840 674 ntBASIC10.93□□□□□ -0.66
CKS1BP61024 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC10.93□□□□□ -0.66
CKS1BP61024 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
CKS1BP61024 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
CKS1BP61024 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 AC004899.2-201ENST00000622993 3860 ntBASIC10.93□□□□□ -0.66
CKS1BP61024 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
CKS1BP61024 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
CKS1BP61024 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CKS1BP61024 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC10.93□□□□□ -0.66
CKS1BP61024 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC10.93□□□□□ -0.66
CKS1BP61024 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC10.92□□□□□ -0.66
CKS1BP61024 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
CKS1BP61024 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 PAN3-AS1-201ENST00000563843 1351 ntBASIC10.92□□□□□ -0.66
CKS1BP61024 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC10.92□□□□□ -0.66
CKS1BP61024 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
CKS1BP61024 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
CKS1BP61024 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC10.92□□□□□ -0.66
CKS1BP61024 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC10.92□□□□□ -0.66
CKS1BP61024 BET1L-202ENST00000332865 533 ntTSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 EMD-201ENST00000369835 966 ntTSL 3 BASIC10.92□□□□□ -0.66
CKS1BP61024 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
CKS1BP61024 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 ATP5G2P1-201ENST00000433580 426 ntBASIC10.92□□□□□ -0.66
CKS1BP61024 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC10.92□□□□□ -0.66
CKS1BP61024 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
CKS1BP61024 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC10.92□□□□□ -0.66
CKS1BP61024 TPM1-218ENST00000559281 851 ntTSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC10.92□□□□□ -0.66
CKS1BP61024 AL732292.2-201ENST00000609649 430 ntBASIC10.92□□□□□ -0.66
CKS1BP61024 NPAP1P7-201ENST00000613027 823 ntBASIC10.92□□□□□ -0.66
CKS1BP61024 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 ALK-205ENST00000618119 4646 ntTSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 F2RL3-201ENST00000248076 3473 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 AL592424.1-201ENST00000563624 1536 ntBASIC10.92□□□□□ -0.66
CKS1BP61024 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
CKS1BP61024 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC10.92□□□□□ -0.66
CKS1BP61024 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC10.92□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms