Protein–RNA interactions for Protein: P53671

LIMK2, LIM domain kinase 2, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2P53671 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
LIMK2P53671 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LIMK2P53671 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
LIMK2P53671 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
LIMK2P53671 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK2P53671 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK2P53671 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK2P53671 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.57■□□□□ 0.08
LIMK2P53671 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.57■□□□□ 0.08
LIMK2P53671 AC044860.1-202ENST00000559481 777 ntBASIC15.57■□□□□ 0.08
LIMK2P53671 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK2P53671 AC104794.3-201ENST00000566840 1248 ntBASIC15.57■□□□□ 0.08
LIMK2P53671 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.57■□□□□ 0.08
LIMK2P53671 AC140912.1-201ENST00000577171 1054 ntBASIC15.57■□□□□ 0.08
LIMK2P53671 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.57■□□□□ 0.08
LIMK2P53671 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LIMK2P53671 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 CU639417.3-201ENST00000624240 1404 ntBASIC15.57■□□□□ 0.08
LIMK2P53671 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK2P53671 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.57■□□□□ 0.08
LIMK2P53671 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK2P53671 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
LIMK2P53671 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LIMK2P53671 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.56■□□□□ 0.08
LIMK2P53671 DFFBP1-201ENST00000433250 979 ntBASIC15.56■□□□□ 0.08
LIMK2P53671 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
LIMK2P53671 GNAQP1-201ENST00000444815 1067 ntBASIC15.56■□□□□ 0.08
LIMK2P53671 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.56■□□□□ 0.08
LIMK2P53671 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.56■□□□□ 0.08
LIMK2P53671 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.56■□□□□ 0.08
LIMK2P53671 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.56■□□□□ 0.08
LIMK2P53671 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.56■□□□□ 0.08
LIMK2P53671 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.56■□□□□ 0.08
LIMK2P53671 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.56■□□□□ 0.08
LIMK2P53671 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 AL391825.1-201ENST00000457671 1364 ntBASIC15.56■□□□□ 0.08
LIMK2P53671 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.56■□□□□ 0.08
LIMK2P53671 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK2P53671 AC232323.1-201ENST00000540724 2099 ntBASIC15.56■□□□□ 0.08
LIMK2P53671 REXO1L5P-201ENST00000622260 2098 ntBASIC15.56■□□□□ 0.08
LIMK2P53671 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.56■□□□□ 0.08
LIMK2P53671 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LIMK2P53671 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms