Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 CRB3P1-201ENST00000449338 276 ntBASIC16■□□□□ 0.15
PTPN9P43378 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16■□□□□ 0.15
PTPN9P43378 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 SPDYE22P-201ENST00000582158 798 ntBASIC16■□□□□ 0.15
PTPN9P43378 CTBP2P3-201ENST00000585629 1255 ntBASIC16■□□□□ 0.15
PTPN9P43378 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 AC092364.2-202ENST00000597012 1073 ntBASIC16■□□□□ 0.15
PTPN9P43378 PRSS30P-206ENST00000641773 873 ntBASIC16■□□□□ 0.15
PTPN9P43378 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 AL158070.2-201ENST00000623713 1621 ntBASIC16■□□□□ 0.15
PTPN9P43378 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16■□□□□ 0.15
PTPN9P43378 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
PTPN9P43378 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PTPN9P43378 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PTPN9P43378 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PTPN9P43378 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.99■□□□□ 0.15
PTPN9P43378 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
PTPN9P43378 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.99■□□□□ 0.15
PTPN9P43378 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.99■□□□□ 0.15
PTPN9P43378 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.99■□□□□ 0.15
PTPN9P43378 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
PTPN9P43378 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.99■□□□□ 0.15
PTPN9P43378 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.99■□□□□ 0.15
PTPN9P43378 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.99■□□□□ 0.15
PTPN9P43378 WASH4P-201ENST00000564273 1246 ntBASIC15.99■□□□□ 0.15
PTPN9P43378 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.99■□□□□ 0.15
PTPN9P43378 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.99■□□□□ 0.15
PTPN9P43378 AC133539.2-201ENST00000604757 467 ntBASIC15.99■□□□□ 0.15
PTPN9P43378 BX539320.1-201ENST00000623759 877 ntBASIC15.99■□□□□ 0.15
PTPN9P43378 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.99■□□□□ 0.15
PTPN9P43378 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.99■□□□□ 0.15
PTPN9P43378 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
PTPN9P43378 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
PTPN9P43378 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTPN9P43378 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.99■□□□□ 0.15
PTPN9P43378 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
PTPN9P43378 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
PTPN9P43378 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.98■□□□□ 0.15
PTPN9P43378 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.98■□□□□ 0.15
PTPN9P43378 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN9P43378 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.98■□□□□ 0.15
PTPN9P43378 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.98■□□□□ 0.15
PTPN9P43378 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.98■□□□□ 0.15
PTPN9P43378 ENPP7P5-201ENST00000541031 1031 ntBASIC15.98■□□□□ 0.15
PTPN9P43378 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.98■□□□□ 0.15
PTPN9P43378 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.98■□□□□ 0.15
PTPN9P43378 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PTPN9P43378 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.98■□□□□ 0.15
PTPN9P43378 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN9P43378 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PTPN9P43378 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN9P43378 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN9P43378 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PTPN9P43378 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms