Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.13■□□□□ 0.65
RFC4P35249 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
RFC4P35249 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
RFC4P35249 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFC4P35249 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFC4P35249 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFC4P35249 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RFC4P35249 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RFC4P35249 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFC4P35249 AL355334.1-201ENST00000417713 215 ntBASIC19.12■□□□□ 0.65
RFC4P35249 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC19.12■□□□□ 0.65
RFC4P35249 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 CDC23-208ENST00000505120 455 ntTSL 3 BASIC19.12■□□□□ 0.65
RFC4P35249 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFC4P35249 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 AL132994.2-201ENST00000603120 687 ntBASIC19.12■□□□□ 0.65
RFC4P35249 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC19.12■□□□□ 0.65
RFC4P35249 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFC4P35249 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC19.12■□□□□ 0.65
RFC4P35249 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 AL662844.4-201ENST00000606367 2838 ntBASIC19.11■□□□□ 0.65
RFC4P35249 MTHFR-217ENST00000641820 1569 ntBASIC19.11■□□□□ 0.65
RFC4P35249 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
RFC4P35249 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 E2F3P2-201ENST00000447755 1422 ntBASIC19.11■□□□□ 0.65
RFC4P35249 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 RN7SL818P-201ENST00000485099 259 ntBASIC19.11■□□□□ 0.65
RFC4P35249 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 RCC2P8-201ENST00000502779 1035 ntBASIC19.11■□□□□ 0.65
RFC4P35249 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC19.11■□□□□ 0.65
RFC4P35249 WDR7-208ENST00000589935 544 ntTSL 4 BASIC19.11■□□□□ 0.65
RFC4P35249 RN7SL725P-201ENST00000606439 259 ntBASIC19.11■□□□□ 0.65
RFC4P35249 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.11■□□□□ 0.65
RFC4P35249 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFC4P35249 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.1■□□□□ 0.65
RFC4P35249 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
RFC4P35249 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.1■□□□□ 0.65
RFC4P35249 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.1■□□□□ 0.65
RFC4P35249 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC19.1■□□□□ 0.65
RFC4P35249 AK6-201ENST00000380818 1183 ntTSL 2 BASIC19.1■□□□□ 0.65
RFC4P35249 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC19.1■□□□□ 0.65
RFC4P35249 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 FAM58BP-201ENST00000439056 645 ntBASIC19.1■□□□□ 0.65
RFC4P35249 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC19.1■□□□□ 0.65
RFC4P35249 RN7SL181P-201ENST00000462921 277 ntBASIC19.1■□□□□ 0.65
RFC4P35249 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC19.1■□□□□ 0.65
RFC4P35249 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC19.1■□□□□ 0.65
RFC4P35249 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC19.1■□□□□ 0.65
RFC4P35249 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
RFC4P35249 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC19.1■□□□□ 0.65
RFC4P35249 IRF3-215ENST00000596822 823 ntTSL 3 BASIC19.1■□□□□ 0.65
RFC4P35249 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 CDK7-214ENST00000626796 358 ntTSL 5 BASIC19.1■□□□□ 0.65
RFC4P35249 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC19.1■□□□□ 0.65
RFC4P35249 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.1■□□□□ 0.65
RFC4P35249 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC19.1■□□□□ 0.65
RFC4P35249 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.1■□□□□ 0.65
RFC4P35249 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFC4P35249 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms