Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CIITAP33076 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CIITAP33076 AL157414.3-201ENST00000624276 1954 ntBASIC17.28■□□□□ 0.36
CIITAP33076 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.28■□□□□ 0.36
CIITAP33076 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
CIITAP33076 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CIITAP33076 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.27■□□□□ 0.36
CIITAP33076 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CIITAP33076 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CIITAP33076 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CIITAP33076 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.27■□□□□ 0.36
CIITAP33076 AC016694.1-201ENST00000434179 700 ntBASIC17.27■□□□□ 0.36
CIITAP33076 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
CIITAP33076 AC007551.1-201ENST00000457394 519 ntBASIC17.27■□□□□ 0.36
CIITAP33076 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CIITAP33076 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.27■□□□□ 0.36
CIITAP33076 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.27■□□□□ 0.36
CIITAP33076 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.27■□□□□ 0.36
CIITAP33076 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.27■□□□□ 0.36
CIITAP33076 AP000812.2-201ENST00000538934 718 ntBASIC17.27■□□□□ 0.36
CIITAP33076 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.27■□□□□ 0.36
CIITAP33076 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.27■□□□□ 0.36
CIITAP33076 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CIITAP33076 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.27■□□□□ 0.36
CIITAP33076 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.27■□□□□ 0.36
CIITAP33076 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CIITAP33076 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.27■□□□□ 0.35
CIITAP33076 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.27■□□□□ 0.35
CIITAP33076 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CIITAP33076 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CIITAP33076 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CIITAP33076 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CIITAP33076 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CIITAP33076 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CIITAP33076 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CIITAP33076 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CIITAP33076 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
CIITAP33076 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
CIITAP33076 PDIA3P1-201ENST00000471856 1510 ntBASIC17.26■□□□□ 0.35
CIITAP33076 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CIITAP33076 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 MIR1909-201ENST00000411312 80 ntBASIC17.26■□□□□ 0.35
CIITAP33076 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.26■□□□□ 0.35
CIITAP33076 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.26■□□□□ 0.35
CIITAP33076 AC022210.1-201ENST00000449856 793 ntBASIC17.26■□□□□ 0.35
CIITAP33076 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CIITAP33076 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CIITAP33076 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.26■□□□□ 0.35
CIITAP33076 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.26■□□□□ 0.35
CIITAP33076 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.26■□□□□ 0.35
CIITAP33076 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.26■□□□□ 0.35
CIITAP33076 FER1L4-210ENST00000615531 5998 ntBASIC17.26■□□□□ 0.35
CIITAP33076 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CIITAP33076 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CIITAP33076 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CIITAP33076 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CIITAP33076 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.26■□□□□ 0.35
CIITAP33076 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms