Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.75■□□□□ 0.11
SLC6A4P31645 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.75■□□□□ 0.11
SLC6A4P31645 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
SLC6A4P31645 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.75■□□□□ 0.11
SLC6A4P31645 EIF3FP3-201ENST00000434851 1086 ntBASIC15.75■□□□□ 0.11
SLC6A4P31645 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.75■□□□□ 0.11
SLC6A4P31645 KRT223P-202ENST00000449164 1292 ntBASIC15.75■□□□□ 0.11
SLC6A4P31645 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
SLC6A4P31645 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 AP000812.2-201ENST00000538934 718 ntBASIC15.75■□□□□ 0.11
SLC6A4P31645 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.75■□□□□ 0.11
SLC6A4P31645 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.75■□□□□ 0.11
SLC6A4P31645 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 AP005482.1-201ENST00000563722 1273 ntBASIC15.75■□□□□ 0.11
SLC6A4P31645 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.75■□□□□ 0.11
SLC6A4P31645 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SLC6A4P31645 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 AC011270.2-201ENST00000624293 2550 ntBASIC15.75■□□□□ 0.11
SLC6A4P31645 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC6A4P31645 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC6A4P31645 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SLC6A4P31645 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.74■□□□□ 0.11
SLC6A4P31645 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.74■□□□□ 0.11
SLC6A4P31645 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.74■□□□□ 0.11
SLC6A4P31645 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.74■□□□□ 0.11
SLC6A4P31645 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.74■□□□□ 0.11
SLC6A4P31645 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.74■□□□□ 0.11
SLC6A4P31645 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.74■□□□□ 0.11
SLC6A4P31645 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 AC133552.6-201ENST00000613406 534 ntBASIC15.74■□□□□ 0.11
SLC6A4P31645 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SLC6A4P31645 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
SLC6A4P31645 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.74■□□□□ 0.11
SLC6A4P31645 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms