Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PTPN4P29074 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.58■□□□□ 0.08
PTPN4P29074 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.58■□□□□ 0.08
PTPN4P29074 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.58■□□□□ 0.08
PTPN4P29074 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.58■□□□□ 0.08
PTPN4P29074 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.58■□□□□ 0.08
PTPN4P29074 FAM207CP-201ENST00000443486 507 ntBASIC15.58■□□□□ 0.08
PTPN4P29074 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.58■□□□□ 0.08
PTPN4P29074 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.58■□□□□ 0.08
PTPN4P29074 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.58■□□□□ 0.08
PTPN4P29074 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.58■□□□□ 0.08
PTPN4P29074 RARRES2P9-201ENST00000565168 469 ntBASIC15.58■□□□□ 0.08
PTPN4P29074 AC073389.1-201ENST00000595595 795 ntBASIC15.58■□□□□ 0.08
PTPN4P29074 AC018529.1-201ENST00000613063 361 ntBASIC15.58■□□□□ 0.08
PTPN4P29074 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
PTPN4P29074 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
PTPN4P29074 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 SBF1P1-201ENST00000444527 5631 ntBASIC15.58■□□□□ 0.08
PTPN4P29074 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTPN4P29074 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
PTPN4P29074 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PTPN4P29074 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN4P29074 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
PTPN4P29074 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN4P29074 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.57■□□□□ 0.08
PTPN4P29074 UGT1A2P-201ENST00000454886 866 ntBASIC15.57■□□□□ 0.08
PTPN4P29074 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.57■□□□□ 0.08
PTPN4P29074 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.57■□□□□ 0.08
PTPN4P29074 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.57■□□□□ 0.08
PTPN4P29074 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN4P29074 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN4P29074 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PTPN4P29074 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN4P29074 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.57■□□□□ 0.08
PTPN4P29074 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN4P29074 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTPN4P29074 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PTPN4P29074 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.57■□□□□ 0.08
PTPN4P29074 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.57■□□□□ 0.08
PTPN4P29074 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 BEND3P1-201ENST00000421591 1944 ntBASIC15.56■□□□□ 0.08
PTPN4P29074 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.56■□□□□ 0.08
PTPN4P29074 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN4P29074 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
PTPN4P29074 AC005252.3-201ENST00000623855 2258 ntBASIC15.56■□□□□ 0.08
PTPN4P29074 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 AC010327.5-201ENST00000586923 3061 ntBASIC15.56■□□□□ 0.08
PTPN4P29074 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN4P29074 AC092580.3-201ENST00000430932 139 ntBASIC15.56■□□□□ 0.08
PTPN4P29074 AC241585.1-201ENST00000433527 519 ntBASIC15.56■□□□□ 0.08
PTPN4P29074 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN4P29074 PRYP6-201ENST00000514804 343 ntBASIC15.56■□□□□ 0.08
PTPN4P29074 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.56■□□□□ 0.08
PTPN4P29074 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.56■□□□□ 0.08
PTPN4P29074 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.56■□□□□ 0.08
PTPN4P29074 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.56■□□□□ 0.08
PTPN4P29074 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.56■□□□□ 0.08
PTPN4P29074 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN4P29074 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PTPN4P29074 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms