Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.71■□□□□ 0.1
COL9A1P20849 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.71■□□□□ 0.1
COL9A1P20849 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.71■□□□□ 0.1
COL9A1P20849 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.71■□□□□ 0.1
COL9A1P20849 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.7■□□□□ 0.1
COL9A1P20849 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
COL9A1P20849 NKILA-202ENST00000614771 2598 ntBASIC15.7■□□□□ 0.1
COL9A1P20849 AL596087.1-201ENST00000400979 1969 ntBASIC15.7■□□□□ 0.1
COL9A1P20849 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.7■□□□□ 0.1
COL9A1P20849 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC15.7■□□□□ 0.1
COL9A1P20849 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.7■□□□□ 0.1
COL9A1P20849 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC15.7■□□□□ 0.1
COL9A1P20849 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC15.7■□□□□ 0.1
COL9A1P20849 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
COL9A1P20849 SMIM11A-201ENST00000399292 850 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC15.7■□□□□ 0.1
COL9A1P20849 ISCA2P1-201ENST00000425548 448 ntBASIC15.7■□□□□ 0.1
COL9A1P20849 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
COL9A1P20849 MIR583HG-201ENST00000507997 704 ntTSL 2 BASIC15.7■□□□□ 0.1
COL9A1P20849 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.7■□□□□ 0.1
COL9A1P20849 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC15.7■□□□□ 0.1
COL9A1P20849 MIR5001-201ENST00000580185 100 ntBASIC15.7■□□□□ 0.1
COL9A1P20849 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.7■□□□□ 0.1
COL9A1P20849 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.7■□□□□ 0.1
COL9A1P20849 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.7■□□□□ 0.1
COL9A1P20849 AC009118.3-201ENST00000622896 873 ntBASIC15.7■□□□□ 0.1
COL9A1P20849 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC15.7■□□□□ 0.1
COL9A1P20849 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.7■□□□□ 0.1
COL9A1P20849 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
COL9A1P20849 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.7■□□□□ 0.1
COL9A1P20849 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
COL9A1P20849 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 PCDHA12-202ENST00000613593 2588 ntBASIC15.7■□□□□ 0.1
COL9A1P20849 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL9A1P20849 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.7■□□□□ 0.1
COL9A1P20849 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.69■□□□□ 0.1
COL9A1P20849 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.69■□□□□ 0.1
COL9A1P20849 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL9A1P20849 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
COL9A1P20849 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.69■□□□□ 0.1
COL9A1P20849 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.69■□□□□ 0.1
COL9A1P20849 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.69■□□□□ 0.1
COL9A1P20849 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
COL9A1P20849 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.69■□□□□ 0.1
COL9A1P20849 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC15.69■□□□□ 0.1
COL9A1P20849 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL9A1P20849 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC15.69■□□□□ 0.1
COL9A1P20849 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
COL9A1P20849 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.69■□□□□ 0.1
COL9A1P20849 MIR4754-201ENST00000582477 89 ntBASIC15.69■□□□□ 0.1
COL9A1P20849 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.69■□□□□ 0.1
COL9A1P20849 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC15.69■□□□□ 0.1
COL9A1P20849 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.69■□□□□ 0.1
COL9A1P20849 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
COL9A1P20849 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
COL9A1P20849 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL9A1P20849 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.68■□□□□ 0.1
COL9A1P20849 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL9A1P20849 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms