Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 AC127383.1-201ENST00000444697 1800 ntBASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 SLC16A6P1-201ENST00000413214 1059 ntBASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 MIR4683-201ENST00000579659 81 ntBASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 AL603764.1-201ENST00000636452 321 ntBASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 AL805961.1-203ENST00000641078 1258 ntBASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 PCDH8P1-201ENST00000428983 2773 ntBASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.23■□□□□ 0.83
CSB-PGBD3P0DP91 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 MTHFR-217ENST00000641820 1569 ntBASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 AL596276.2-201ENST00000447525 331 ntBASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 FKBP4P6-201ENST00000457486 1332 ntBASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 AC004899.1-201ENST00000424687 1714 ntBASIC20.22■□□□□ 0.83
CSB-PGBD3P0DP91 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 NPPA-201ENST00000376476 728 ntTSL 3 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 IGF1-203ENST00000392904 761 ntTSL 5 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 CMC1-204ENST00000423894 549 ntTSL 2 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 TUBB8P8-201ENST00000458717 1058 ntBASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 FADS2-212ENST00000522639 360 ntTSL 5 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 SYT17-208ENST00000568433 812 ntTSL 3 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 FADS2-215ENST00000574708 385 ntTSL 3 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 REXO1L5P-201ENST00000622260 2098 ntBASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CSB-PGBD3P0DP91 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms