Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC13.93□□□□□ -0.18
SPTA1P02549 AC078991.1-201ENST00000437297 610 ntBASIC13.93□□□□□ -0.18
SPTA1P02549 DDX39AP1-201ENST00000445147 1181 ntBASIC13.93□□□□□ -0.18
SPTA1P02549 FGFR3P1-201ENST00000449999 601 ntBASIC13.93□□□□□ -0.18
SPTA1P02549 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SPTA1P02549 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.93□□□□□ -0.18
SPTA1P02549 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC13.93□□□□□ -0.18
SPTA1P02549 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC13.93□□□□□ -0.18
SPTA1P02549 AL022344.2-201ENST00000568976 968 ntBASIC13.93□□□□□ -0.18
SPTA1P02549 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC13.93□□□□□ -0.18
SPTA1P02549 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SPTA1P02549 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SPTA1P02549 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SPTA1P02549 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
SPTA1P02549 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SPTA1P02549 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.93□□□□□ -0.18
SPTA1P02549 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SPTA1P02549 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SPTA1P02549 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SPTA1P02549 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
SPTA1P02549 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.93□□□□□ -0.18
SPTA1P02549 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.93□□□□□ -0.18
SPTA1P02549 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SPTA1P02549 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 AC074138.1-201ENST00000611182 1303 ntBASIC13.92□□□□□ -0.18
SPTA1P02549 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 FAU-202ENST00000434372 533 ntTSL 2 BASIC13.92□□□□□ -0.18
SPTA1P02549 FAM58BP-201ENST00000439056 645 ntBASIC13.92□□□□□ -0.18
SPTA1P02549 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.92□□□□□ -0.18
SPTA1P02549 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 BNIP3P13-201ENST00000599968 566 ntBASIC13.92□□□□□ -0.18
SPTA1P02549 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
SPTA1P02549 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
SPTA1P02549 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SPTA1P02549 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SPTA1P02549 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SPTA1P02549 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SPTA1P02549 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SPTA1P02549 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.92□□□□□ -0.18
SPTA1P02549 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.92□□□□□ -0.18
SPTA1P02549 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC13.92□□□□□ -0.18
SPTA1P02549 AC100850.1-201ENST00000506768 649 ntBASIC13.92□□□□□ -0.18
SPTA1P02549 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC13.92□□□□□ -0.18
SPTA1P02549 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SPTA1P02549 AC011477.6-201ENST00000604980 1927 ntBASIC13.92□□□□□ -0.18
SPTA1P02549 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.92□□□□□ -0.18
SPTA1P02549 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
SPTA1P02549 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.91□□□□□ -0.18
SPTA1P02549 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.91□□□□□ -0.18
SPTA1P02549 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.91□□□□□ -0.18
SPTA1P02549 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
SPTA1P02549 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC13.91□□□□□ -0.18
SPTA1P02549 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
SPTA1P02549 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SPTA1P02549 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms