Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC22.53■■□□□ 1.2
RAPGEF3O95398 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RAPGEF3O95398 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC22.53■■□□□ 1.2
RAPGEF3O95398 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RAPGEF3O95398 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 STK16-203ENST00000409516 895 ntTSL 2 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 KRT17P4-201ENST00000429445 819 ntBASIC22.52■■□□□ 1.2
RAPGEF3O95398 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 AC092638.2-201ENST00000441105 947 ntBASIC22.52■■□□□ 1.2
RAPGEF3O95398 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 AREG-202ENST00000502307 956 ntTSL 5 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 MT3-203ENST00000565838 421 ntTSL 3 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 ILF3-AS1-201ENST00000591501 1983 ntBASIC22.52■■□□□ 1.2
RAPGEF3O95398 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
RAPGEF3O95398 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RAPGEF3O95398 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 AQP7P5-201ENST00000428759 1049 ntBASIC22.51■■□□□ 1.19
RAPGEF3O95398 AQP7P4-201ENST00000447083 1042 ntBASIC22.51■■□□□ 1.19
RAPGEF3O95398 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 AQP7P2-201ENST00000453967 1041 ntBASIC22.51■■□□□ 1.19
RAPGEF3O95398 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 RPS15-202ENST00000585665 467 ntTSL 3 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 AQP7P3-201ENST00000624547 1041 ntBASIC22.51■■□□□ 1.19
RAPGEF3O95398 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 CA12-203ENST00000422263 2556 ntTSL 2 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC22.51■■□□□ 1.19
RAPGEF3O95398 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RAPGEF3O95398 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC22.5■■□□□ 1.19
RAPGEF3O95398 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 CICP12-201ENST00000455801 843 ntBASIC22.5■■□□□ 1.19
RAPGEF3O95398 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC22.5■■□□□ 1.19
RAPGEF3O95398 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC22.5■■□□□ 1.19
RAPGEF3O95398 AC027139.1-201ENST00000565286 951 ntBASIC22.5■■□□□ 1.19
RAPGEF3O95398 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC22.5■■□□□ 1.19
RAPGEF3O95398 AC012073.1-201ENST00000606114 1108 ntBASIC22.5■■□□□ 1.19
RAPGEF3O95398 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC22.5■■□□□ 1.19
RAPGEF3O95398 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC22.5■■□□□ 1.19
RAPGEF3O95398 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC22.5■■□□□ 1.19
RAPGEF3O95398 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 AL596087.1-201ENST00000400979 1969 ntBASIC22.5■■□□□ 1.19
RAPGEF3O95398 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RAPGEF3O95398 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
RAPGEF3O95398 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
RAPGEF3O95398 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RAPGEF3O95398 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC22.49■■□□□ 1.19
RAPGEF3O95398 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC22.49■■□□□ 1.19
RAPGEF3O95398 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RAPGEF3O95398 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
RAPGEF3O95398 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RAPGEF3O95398 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RAPGEF3O95398 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RAPGEF3O95398 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms