Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC6.68□□□□□ -1.34
USH2AO75445 CSNK1G2P1-201ENST00000442675 955 ntBASIC6.68□□□□□ -1.34
USH2AO75445 AC092612.1-201ENST00000514501 998 ntBASIC6.68□□□□□ -1.34
USH2AO75445 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC6.68□□□□□ -1.34
USH2AO75445 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 AC021305.1-201ENST00000520656 1514 ntBASIC6.68□□□□□ -1.34
USH2AO75445 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 HLA-DQB1-202ENST00000399079 1501 ntBASIC6.68□□□□□ -1.34
USH2AO75445 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 PTGER4P2-201ENST00000328411 252 ntBASIC6.68□□□□□ -1.34
USH2AO75445 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 AL929302.1-201ENST00000426556 871 ntBASIC6.68□□□□□ -1.34
USH2AO75445 HLA-K-203ENST00000430151 1046 ntBASIC6.68□□□□□ -1.34
USH2AO75445 KRT8P30-201ENST00000432100 650 ntBASIC6.68□□□□□ -1.34
USH2AO75445 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC6.68□□□□□ -1.34
USH2AO75445 PTGER4P3-201ENST00000458150 252 ntBASIC6.68□□□□□ -1.34
USH2AO75445 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC6.68□□□□□ -1.34
USH2AO75445 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 PRMT1P1-201ENST00000604252 1009 ntBASIC6.68□□□□□ -1.34
USH2AO75445 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
USH2AO75445 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC6.68□□□□□ -1.34
USH2AO75445 CAP2-207ENST00000493172 861 ntTSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 LY6E-215ENST00000523847 427 ntTSL 3 BASIC6.68□□□□□ -1.34
USH2AO75445 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC6.68□□□□□ -1.34
USH2AO75445 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 AP000769.1-203ENST00000637245 208 ntBASIC6.68□□□□□ -1.34
USH2AO75445 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 AP000593.2-201ENST00000542775 1433 ntBASIC6.68□□□□□ -1.34
USH2AO75445 NHP2P1-201ENST00000335274 462 ntBASIC6.68□□□□□ -1.34
USH2AO75445 RN7SKP175-201ENST00000408472 289 ntBASIC6.68□□□□□ -1.34
USH2AO75445 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC6.68□□□□□ -1.34
USH2AO75445 AC092580.1-201ENST00000433998 658 ntBASIC6.68□□□□□ -1.34
USH2AO75445 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC6.68□□□□□ -1.34
USH2AO75445 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC6.68□□□□□ -1.34
USH2AO75445 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 AC078925.2-201ENST00000624013 1973 ntBASIC6.68□□□□□ -1.34
USH2AO75445 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC6.68□□□□□ -1.34
USH2AO75445 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USH2AO75445 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC6.68□□□□□ -1.34
USH2AO75445 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
USH2AO75445 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USH2AO75445 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
USH2AO75445 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USH2AO75445 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USH2AO75445 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC6.67□□□□□ -1.34
USH2AO75445 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
USH2AO75445 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC6.67□□□□□ -1.34
USH2AO75445 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms