Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.31■□□□□ 0.36
ACTN4O43707 FAM86GP-201ENST00000448322 971 ntBASIC17.31■□□□□ 0.36
ACTN4O43707 SPDYE18-201ENST00000510091 1050 ntBASIC17.31■□□□□ 0.36
ACTN4O43707 DUX4L27-201ENST00000554796 1261 ntBASIC17.31■□□□□ 0.36
ACTN4O43707 AC007191.1-201ENST00000623179 2995 ntBASIC17.31■□□□□ 0.36
ACTN4O43707 AL158212.4-201ENST00000624062 1286 ntBASIC17.31■□□□□ 0.36
ACTN4O43707 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.31■□□□□ 0.36
ACTN4O43707 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.31■□□□□ 0.36
ACTN4O43707 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
ACTN4O43707 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
ACTN4O43707 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ACTN4O43707 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
ACTN4O43707 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
ACTN4O43707 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.3■□□□□ 0.36
ACTN4O43707 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.3■□□□□ 0.36
ACTN4O43707 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.3■□□□□ 0.36
ACTN4O43707 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.3■□□□□ 0.36
ACTN4O43707 AL589987.1-201ENST00000453380 819 ntBASIC17.3■□□□□ 0.36
ACTN4O43707 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC17.3■□□□□ 0.36
ACTN4O43707 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
ACTN4O43707 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.3■□□□□ 0.36
ACTN4O43707 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.3■□□□□ 0.36
ACTN4O43707 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
ACTN4O43707 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
ACTN4O43707 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.3■□□□□ 0.36
ACTN4O43707 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
ACTN4O43707 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
ACTN4O43707 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ACTN4O43707 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.29■□□□□ 0.36
ACTN4O43707 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ACTN4O43707 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ACTN4O43707 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.29■□□□□ 0.36
ACTN4O43707 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.29■□□□□ 0.36
ACTN4O43707 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.29■□□□□ 0.36
ACTN4O43707 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
ACTN4O43707 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.29■□□□□ 0.36
ACTN4O43707 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 MIR943-201ENST00000401286 94 ntBASIC17.29■□□□□ 0.36
ACTN4O43707 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.29■□□□□ 0.36
ACTN4O43707 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.29■□□□□ 0.36
ACTN4O43707 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
ACTN4O43707 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.29■□□□□ 0.36
ACTN4O43707 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
ACTN4O43707 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
ACTN4O43707 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.29■□□□□ 0.36
ACTN4O43707 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
ACTN4O43707 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
ACTN4O43707 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.29■□□□□ 0.36
ACTN4O43707 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ACTN4O43707 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ACTN4O43707 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
ACTN4O43707 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms