Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TM9SF3Q9HD45 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TM9SF3Q9HD45 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.47■□□□□ 0.07
TM9SF3Q9HD45 AC020907.1-201ENST00000616460 1350 ntBASIC15.47■□□□□ 0.07
TM9SF3Q9HD45 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TM9SF3Q9HD45 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TM9SF3Q9HD45 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TM9SF3Q9HD45 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TM9SF3Q9HD45 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 AC144831.1-201ENST00000573312 2656 ntBASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 AP001582.1-201ENST00000525856 295 ntBASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 AC009542.2-202ENST00000619004 1067 ntBASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.46■□□□□ 0.07
TM9SF3Q9HD45 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
TM9SF3Q9HD45 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TM9SF3Q9HD45 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
TM9SF3Q9HD45 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TM9SF3Q9HD45 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TM9SF3Q9HD45 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TM9SF3Q9HD45 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 PFN1P12-201ENST00000455938 534 ntBASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 AC244093.1-201ENST00000610837 814 ntBASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms