Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 AJ011931.1-201ENST00000618749 2492 ntBASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 AL645939.2-201ENST00000427340 991 ntBASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM56Q9BRZ2 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 KRT18P28-201ENST00000453838 1332 ntBASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 KRT8P12-202ENST00000472924 1397 ntBASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 AC139749.1-202ENST00000617529 3139 ntBASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 LINC00552-201ENST00000625151 2579 ntBASIC15.81■□□□□ 0.12
TRIM56Q9BRZ2 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM56Q9BRZ2 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms